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Asym. Unit
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Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.1 MB)
Biol.Unit 1 (2.1 MB)
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(1)
Title
:
NATIVE HUMAN 20S PROTEASOME IN MG-ACETATE AT 2.2 ANGSTROM
Authors
:
J. Schrader, F. Henneberg, R. Mata, K. Tittmann, T. R. Schneider, H. Sta G. Bourenkov, A. Chari
Date
:
30 Jun 16 (Deposition) - 17 Aug 16 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
Proteasome, Multicatalytic Proteinase, Ntn-Hydrolase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Schrader, F. Henneberg, R. A. Mata, K. Tittmann, T. R. Schneider, H. Stark, G. Bourenkov, A. Chari
The Inhibition Mechanism Of Human 20S Proteasomes Enables Next-Generation Inhibitor Design.
Science V. 353 594 2016
[
close entry info
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Hetero Components
(5, 36)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
1b: PENTAETHYLENE GLYCOL (1PEb)
1c: PENTAETHYLENE GLYCOL (1PEc)
1d: PENTAETHYLENE GLYCOL (1PEd)
1e: PENTAETHYLENE GLYCOL (1PEe)
1f: PENTAETHYLENE GLYCOL (1PEf)
1g: PENTAETHYLENE GLYCOL (1PEg)
1h: PENTAETHYLENE GLYCOL (1PEh)
1i: PENTAETHYLENE GLYCOL (1PEi)
2a: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1a)
2b: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1b)
2c: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1c)
2d: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1d)
2e: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1e)
2f: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1f)
2g: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1g)
2h: (2~{R})-2-AZANYL-3-[(3~{R})-1-ETHY... (6V1h)
3a: POTASSIUM ION (Ka)
3b: POTASSIUM ION (Kb)
3c: POTASSIUM ION (Kc)
3d: POTASSIUM ION (Kd)
3e: POTASSIUM ION (Ke)
3f: POTASSIUM ION (Kf)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
4i: MAGNESIUM ION (MGi)
5a: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMa)
5b: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMb)
5c: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMc)
5d: S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE (YCMd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
9
Ligand/Ion
PENTAETHYLENE GLYCOL
2
6V1
8
Mod. Amino Acid
(2~{R})-2-AZANYL-3-[(3~{R})-1-ETHYL-2,5-BIS(OXIDANYLIDENE)PYRROLIDIN-3-YL]SULFANYL-PROPANOICACID
3
K
6
Ligand/Ion
POTASSIUM ION
4
MG
9
Ligand/Ion
MAGNESIUM ION
5
YCM
4
Mod. Amino Acid
S-(2-AMINO-2-OXOETHYL)-L-CYSTEINE
[
close Hetero Component info
]
Sites
(32, 32)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR G:14 , TYR G:125 , ASN G:128 , MET G:131 , HOH G:423
binding site for residue K G 301
02
AC2
SOFTWARE
ILE H:163 , ASP H:166 , SER H:169 , HOH H:486 , ASP Z:213
binding site for residue MG H 301
03
AC3
SOFTWARE
TYR H:90 , GLU I:96
binding site for residue 1PE H 302
04
AC4
SOFTWARE
VAL I:174 , ASP I:177 , SER I:180 , HOH I:456 , HOH I:458
binding site for residue MG I 301
05
AC5
SOFTWARE
GLU I:96 , LYS I:97 , ASP J:90
binding site for residue 1PE I 302
06
AC6
SOFTWARE
ASP I:204 , THR Y:164 , ASP Y:167 , SER Y:170 , HOH Y:492
binding site for residue MG I 303
07
AC7
SOFTWARE
HOH J:407 , HOH J:426 , HOH J:466 , HOH J:503 , HOH J:513 , HOH K:476
binding site for residue MG J 301
08
AC8
SOFTWARE
THR K:164 , ASP K:167 , SER K:170 , HOH K:443 , ASP W:204
binding site for residue MG K 301
09
AC9
SOFTWARE
HOH K:449 , PHE L:101
binding site for residue 1PE K 302
10
AD1
SOFTWARE
PHE L:33 , TYR M:141 , THR b:22
binding site for residue 1PE L 301
11
AD2
SOFTWARE
ALA L:183 , ASP L:186 , THR L:189 , HOH L:433
binding site for residue K L 302
12
AD3
SOFTWARE
ASP L:213 , ILE V:163 , ASP V:166 , SER V:169 , HOH V:457
binding site for residue MG L 303
13
AD4
SOFTWARE
TYR G:103 , PHE H:88 , TYR N:90 , HOH N:422 , HOH N:460 , HOH N:518
binding site for residue 1PE N 301
14
AD5
SOFTWARE
MET N:164 , ASP N:167 , SER N:170 , HOH N:501 , HOH N:540
binding site for residue K N 302
15
AD6
SOFTWARE
THR U:14 , TYR U:125 , ASN U:128 , MET U:131 , HOH U:448
binding site for residue K U 301
16
AD7
SOFTWARE
GLN V:91 , HOH V:432 , HOH V:487 , ASP b:51 , HOH b:408 , HOH b:409 , HOH b:442
binding site for residue MG V 301
17
AD8
SOFTWARE
VAL W:174 , ASP W:177 , SER W:180 , HOH W:434 , HOH W:448
binding site for residue MG W 301
18
AD9
SOFTWARE
GLU W:96 , LYS W:97 , HOH W:426 , HOH W:440
binding site for residue 1PE W 302
19
AE1
SOFTWARE
HOH X:401 , HOH X:403 , HOH X:444 , HOH X:499 , HOH X:507 , HOH Y:512
binding site for residue MG X 301
20
AE2
SOFTWARE
TYR Z:97 , SER Z:98 , HOH Z:460
binding site for residue 1PE Z 301
21
AE3
SOFTWARE
ALA Z:183 , ASP Z:186 , THR Z:189 , HOH Z:418
binding site for residue K Z 302
22
AE4
SOFTWARE
THR N:22 , PHE Z:33 , TYR a:141 , TYR a:144 , HOH a:429 , HOH a:487
binding site for residue 1PE a 301
23
AE5
SOFTWARE
TYR U:103 , PHE V:88 , GLN V:91 , ALA b:58 , TYR b:61 , HOH b:511
binding site for residue 1PE b 301
24
AE6
SOFTWARE
MET b:164 , ASP b:167 , SER b:170 , HOH b:466 , HOH b:508
binding site for residue K b 302
25
AE7
SOFTWARE
VAL E:29 , PRO E:127 , TYR E:128 , VAL E:130 , GLN E:146 , THR E:147 , SER E:150 , ALA E:151 , ASN E:152 , HOH E:308 , HOH E:337 , HOH E:343
binding site for Ligand residues 6V1 E 148 through PRO E 149 bound to THR E 147
26
AE8
SOFTWARE
MET S:26 , VAL S:29 , PRO S:127 , TYR S:128 , VAL S:130 , GLN S:146 , THR S:147 , SER S:150 , ALA S:151 , ASN S:152 , HOH S:344 , HOH S:346 , HOH S:348
binding site for Ligand residues 6V1 S 148 through PRO S 149 bound to THR S 147
27
AE9
SOFTWARE
GLY U:44 , LYS U:45 , ALA U:48 , PRO U:149 , THR U:194 , VAL U:195 , VAL U:220 , THR U:221 , VAL U:222 , HOH U:402
binding site for Di-peptide ASP U 46 and 6V1 U 47
28
AF1
SOFTWARE
VAL U:42 , GLY U:44 , ASP U:46 , VAL U:49 , PRO U:149 , THR U:194 , VAL U:195 , VAL U:219 , VAL U:220
binding site for Di-peptide 6V1 U 47 and ALA U 48
29
AF2
SOFTWARE
LYS O:50 , TYR O:56 , ASP O:57 , SER O:60 , VAL O:61 , LYS U:116 , TYR U:152 , LYS U:153 , TYR U:159 , GLY U:162 , PHE U:163
binding site for Di-peptide TYR U 160 and 6V1 U 161
30
AF3
SOFTWARE
LYS O:50 , TYR O:56 , ASP O:57 , SER O:60 , VAL U:151 , TYR U:152 , LYS U:153 , TYR U:160 , PHE U:163
binding site for Di-peptide 6V1 U 161 and GLY U 162
31
AF4
SOFTWARE
ARG W:65 , PHE X:56 , TYR X:59 , ARG X:86 , ASN X:87 , LEU X:88 , ALA X:89 , LEU X:92 , ARG X:93 , SER X:94 , THR X:96 , PRO X:97 , TYR X:98 , HOH X:416 , HOH X:423
binding site for Di-peptide ASP X 90 and 6V1 X 91
32
AF5
SOFTWARE
PHE X:56 , TYR X:59 , ASN X:87 , LEU X:88 , ALA X:89 , ASP X:90 , ARG X:93 , SER X:94 , THR X:96 , PRO X:97 , TYR X:98 , HOH X:408
binding site for Di-peptide 6V1 X 91 and LEU X 92
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SCOP Domains
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