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5LDS
Biol. Unit 1
Info
Asym.Unit (1.2 MB)
Biol.Unit 1 (636 KB)
Biol.Unit 2 (639 KB)
Biol.Unit 3 (637 KB)
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(1)
Title
:
STRUCTURE OF THE PORCINE AMINOPEPTIDASE N ECTODOMAIN
Authors
:
C. Santiago, J. Reguera, G. Mudgal, J. M. Casasnovas
Date
:
27 Jun 16 (Deposition) - 05 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Cd13, Papn, Aminopeptidase, Coronavirus, Receptor, Enzime, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Santiago, G. Mudgal, J. Reguera, R. Recacha, S. Albrecht, L. Enjuanes, J. M. Casasnovas
Allosteric Inhibition Of Aminopeptidase N Functions Related To Tumor Growth And Virus Infection.
Sci Rep V. 7 46045 2017
[
close entry info
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Hetero Components
(3, 27)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
BMA
4
Ligand/Ion
BETA-D-MANNOSE
3
NAG
21
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AD1 (SOFTWARE)
06: AD2 (SOFTWARE)
07: AD3 (SOFTWARE)
08: AD4 (SOFTWARE)
09: AD5 (SOFTWARE)
10: AD6 (SOFTWARE)
11: AD7 (SOFTWARE)
12: AD8 (SOFTWARE)
13: AD9 (SOFTWARE)
14: AE1 (SOFTWARE)
15: AE2 (SOFTWARE)
16: AE3 (SOFTWARE)
17: AE4 (SOFTWARE)
18: AE5 (SOFTWARE)
19: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:406 , ACT A:1017
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ALA A:348 , GLU A:350 , HIS A:383 , GLU A:384 , HIS A:387 , GLU A:406 , TYR A:472 , ZN A:1001 , HOH A:1203
binding site for residue ACT A 1017
03
AC3
SOFTWARE
HIS B:383 , HIS B:387 , GLU B:406 , ACT B:1012
binding site for residue ZN B 1001
04
AC4
SOFTWARE
ALA B:348 , GLU B:350 , HIS B:383 , GLU B:384 , HIS B:387 , GLU B:406 , TYR B:472 , ZN B:1001 , HOH B:1227
binding site for residue ACT B 1012
05
AD1
SOFTWARE
ASN A:82 , ILE A:104 , GLU A:263 , NAG A:1009 , HOH A:1146 , HOH A:1277 , HOH A:1434 , HOH A:2042
binding site for Mono-Saccharide NAG A 1016 bound to ASN A 82
06
AD2
SOFTWARE
ASN A:124 , GLN A:178 , GLY A:179 , HOH A:1308 , HOH A:1513 , HOH A:1603
binding site for Mono-Saccharide NAG A 1002 bound to ASN A 124
07
AD3
SOFTWARE
SER A:80 , ASN A:82 , ARG A:106 , ASN A:229 , THR A:266 , NAG A:1016 , HOH A:1498
binding site for Poly-Saccharide residues NAG A 1009 through NAG A 1010 bound to ASN A 229
08
AD4
SOFTWARE
VAL A:198 , LYS A:200 , ASN A:237 , GLU A:281 , HOH A:1121 , HOH A:1272 , HOH A:1541 , HOH A:1553 , HOH A:1826
binding site for Poly-Saccharide residues NAG A 1011 through NAG A 1012 bound to ASN A 237
09
AD5
SOFTWARE
ALA A:223 , PHE A:502 , ASN A:506 , HOH A:1140 , HOH A:1274 , HOH A:1535 , HOH A:1602 , HOH A:1698 , HOH A:1915
binding site for Mono-Saccharide NAG A 1013 bound to ASN A 506
10
AD6
SOFTWARE
ASP A:428 , ASN A:622 , ILE A:653 , HOH A:1305 , HOH A:1359 , HOH A:1496 , HOH A:1516 , HOH A:1744 , HOH A:1908 , HOH A:1913
binding site for Poly-Saccharide residues NAG A 1014 through NAG A 1015 bound to ASN A 622
11
AD7
SOFTWARE
ASN A:646 , HOH A:1112 , HOH A:1311 , HOH A:1623 , GLU D:287 , THR D:288 , ALA D:289 , GLN D:290 , GLY D:292
binding site for Poly-Saccharide residues NAG A 1003 through BMA A 1008 bound to ASN A 646
12
AD8
SOFTWARE
ASN B:82 , ILE B:104 , GLU B:172 , GLU B:263 , NAG B:1003 , HOH B:1612
binding site for Mono-Saccharide NAG B 1011 bound to ASN B 82
13
AD9
SOFTWARE
LEU B:96 , ASN B:124 , GLN B:178 , HOH B:1264 , HOH B:1417 , HOH B:1741
binding site for Mono-Saccharide NAG B 1002 bound to ASN B 124
14
AE1
SOFTWARE
SER B:80 , ASN B:82 , ARG B:106 , ASN B:229 , THR B:266 , NAG B:1011
binding site for Poly-Saccharide residues NAG B 1003 through NAG B 1004 bound to ASN B 229
15
AE2
SOFTWARE
VAL B:198 , LYS B:200 , ASN B:237 , GLU B:281 , HOH B:1356 , HOH B:1364 , HOH B:1736
binding site for Poly-Saccharide residues NAG B 1005 through NAG B 1006 bound to ASN B 237
16
AE3
SOFTWARE
ALA B:223 , PHE B:502 , GLN B:505 , ASN B:506 , HOH B:1279 , HOH B:1424 , HOH B:1517 , HOH B:1538 , HOH B:1765 , HOH B:1810
binding site for Mono-Saccharide NAG B 1007 bound to ASN B 506
17
AE4
SOFTWARE
ASP B:428 , MET B:592 , ASN B:622 , HOH B:1195 , HOH B:1395 , HOH B:1611 , HOH B:1654
binding site for Poly-Saccharide residues NAG B 1008 through NAG B 1009 bound to ASN B 622
18
AE5
SOFTWARE
ASN B:646 , SER B:648 , VAL B:649 , HOH B:1129 , HOH B:1138
binding site for Mono-Saccharide NAG B 1010 bound to ASN B 646
19
AF9
SOFTWARE
ILE A:371 , LYS A:374 , GLU A:421 , THR A:423 , TRP A:424 , GLU A:742 , GLN A:747 , HOH A:1257 , ASN D:328 , HIS D:500 , HOH D:1108 , HOH D:1169 , HOH D:1178 , HOH D:1191 , HOH D:1255 , HOH D:1306 , HOH D:1640 , HOH D:1657
binding site for Poly-Saccharide residues NAG D 1004 through BMA D 1007 bound to ASN D 328
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
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SCOP Domains
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CATH Domains
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Pfam Domains
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