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5LDS
Asym. Unit
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Asym.Unit (1.2 MB)
Biol.Unit 1 (636 KB)
Biol.Unit 2 (639 KB)
Biol.Unit 3 (637 KB)
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(1)
Title
:
STRUCTURE OF THE PORCINE AMINOPEPTIDASE N ECTODOMAIN
Authors
:
C. Santiago, J. Reguera, G. Mudgal, J. M. Casasnovas
Date
:
27 Jun 16 (Deposition) - 05 Apr 17 (Release) - 19 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: C,D (1x)
Keywords
:
Cd13, Papn, Aminopeptidase, Coronavirus, Receptor, Enzime, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Santiago, G. Mudgal, J. Reguera, R. Recacha, S. Albrecht, L. Enjuanes, J. M. Casasnovas
Allosteric Inhibition Of Aminopeptidase N Functions Related To Tumor Growth And Virus Infection.
Sci Rep V. 7 46045 2017
[
close entry info
]
Hetero Components
(4, 60)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
2d: BETA-D-MANNOSE (BMAd)
2e: BETA-D-MANNOSE (BMAe)
2f: BETA-D-MANNOSE (BMAf)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
3ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
3ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
3aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
3ak: N-ACETYL-D-GLUCOSAMINE (NAGak)
3al: N-ACETYL-D-GLUCOSAMINE (NAGal)
3am: N-ACETYL-D-GLUCOSAMINE (NAGam)
3an: N-ACETYL-D-GLUCOSAMINE (NAGan)
3ao: N-ACETYL-D-GLUCOSAMINE (NAGao)
3ap: N-ACETYL-D-GLUCOSAMINE (NAGap)
3aq: N-ACETYL-D-GLUCOSAMINE (NAGaq)
3ar: N-ACETYL-D-GLUCOSAMINE (NAGar)
3as: N-ACETYL-D-GLUCOSAMINE (NAGas)
3at: N-ACETYL-D-GLUCOSAMINE (NAGat)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
4
Ligand/Ion
ACETATE ION
2
BMA
6
Ligand/Ion
BETA-D-MANNOSE
3
NAG
46
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(39, 39)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
37: AG1 (SOFTWARE)
38: AG2 (SOFTWARE)
39: AG3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:406 , ACT A:1017
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ALA A:348 , GLU A:350 , HIS A:383 , GLU A:384 , HIS A:387 , GLU A:406 , TYR A:472 , ZN A:1001 , HOH A:1203
binding site for residue ACT A 1017
03
AC3
SOFTWARE
HIS B:383 , HIS B:387 , GLU B:406 , ACT B:1012
binding site for residue ZN B 1001
04
AC4
SOFTWARE
ALA B:348 , GLU B:350 , HIS B:383 , GLU B:384 , HIS B:387 , GLU B:406 , TYR B:472 , ZN B:1001 , HOH B:1227
binding site for residue ACT B 1012
05
AC5
SOFTWARE
HIS C:383 , HIS C:387 , GLU C:406 , ACT C:1011
binding site for residue ZN C 1001
06
AC6
SOFTWARE
ASN C:646 , SER C:648 , HOH C:1101 , HOH C:1133
binding site for residue NAG C 1009
07
AC7
SOFTWARE
ALA C:348 , GLU C:350 , HIS C:383 , GLU C:384 , HIS C:387 , GLU C:406 , TYR C:472 , ZN C:1001 , HOH C:1192
binding site for residue ACT C 1011
08
AC8
SOFTWARE
HIS D:383 , HIS D:387 , GLU D:406 , ACT D:1020
binding site for residue ZN D 1001
09
AC9
SOFTWARE
ALA D:348 , GLU D:350 , HIS D:383 , GLU D:384 , HIS D:387 , GLU D:406 , TYR D:472 , ZN D:1001 , HOH D:1251
binding site for residue ACT D 1020
10
AD1
SOFTWARE
ASN A:82 , ILE A:104 , GLU A:263 , NAG A:1009 , HOH A:1146 , HOH A:1277 , HOH A:1434 , HOH A:2042
binding site for Mono-Saccharide NAG A 1016 bound to ASN A 82
11
AD2
SOFTWARE
ASN A:124 , GLN A:178 , GLY A:179 , HOH A:1308 , HOH A:1513 , HOH A:1603
binding site for Mono-Saccharide NAG A 1002 bound to ASN A 124
12
AD3
SOFTWARE
SER A:80 , ASN A:82 , ARG A:106 , ASN A:229 , THR A:266 , NAG A:1016 , HOH A:1498
binding site for Poly-Saccharide residues NAG A 1009 through NAG A 1010 bound to ASN A 229
13
AD4
SOFTWARE
VAL A:198 , LYS A:200 , ASN A:237 , GLU A:281 , HOH A:1121 , HOH A:1272 , HOH A:1541 , HOH A:1553 , HOH A:1826
binding site for Poly-Saccharide residues NAG A 1011 through NAG A 1012 bound to ASN A 237
14
AD5
SOFTWARE
ALA A:223 , PHE A:502 , ASN A:506 , HOH A:1140 , HOH A:1274 , HOH A:1535 , HOH A:1602 , HOH A:1698 , HOH A:1915
binding site for Mono-Saccharide NAG A 1013 bound to ASN A 506
15
AD6
SOFTWARE
ASP A:428 , ASN A:622 , ILE A:653 , HOH A:1305 , HOH A:1359 , HOH A:1496 , HOH A:1516 , HOH A:1744 , HOH A:1908 , HOH A:1913
binding site for Poly-Saccharide residues NAG A 1014 through NAG A 1015 bound to ASN A 622
16
AD7
SOFTWARE
ASN A:646 , HOH A:1112 , HOH A:1311 , HOH A:1623 , GLU D:287 , THR D:288 , ALA D:289 , GLN D:290 , GLY D:292
binding site for Poly-Saccharide residues NAG A 1003 through BMA A 1008 bound to ASN A 646
17
AD8
SOFTWARE
ASN B:82 , ILE B:104 , GLU B:172 , GLU B:263 , NAG B:1003 , HOH B:1612
binding site for Mono-Saccharide NAG B 1011 bound to ASN B 82
18
AD9
SOFTWARE
LEU B:96 , ASN B:124 , GLN B:178 , HOH B:1264 , HOH B:1417 , HOH B:1741
binding site for Mono-Saccharide NAG B 1002 bound to ASN B 124
19
AE1
SOFTWARE
SER B:80 , ASN B:82 , ARG B:106 , ASN B:229 , THR B:266 , NAG B:1011
binding site for Poly-Saccharide residues NAG B 1003 through NAG B 1004 bound to ASN B 229
20
AE2
SOFTWARE
VAL B:198 , LYS B:200 , ASN B:237 , GLU B:281 , HOH B:1356 , HOH B:1364 , HOH B:1736
binding site for Poly-Saccharide residues NAG B 1005 through NAG B 1006 bound to ASN B 237
21
AE3
SOFTWARE
ALA B:223 , PHE B:502 , GLN B:505 , ASN B:506 , HOH B:1279 , HOH B:1424 , HOH B:1517 , HOH B:1538 , HOH B:1765 , HOH B:1810
binding site for Mono-Saccharide NAG B 1007 bound to ASN B 506
22
AE4
SOFTWARE
ASP B:428 , MET B:592 , ASN B:622 , HOH B:1195 , HOH B:1395 , HOH B:1611 , HOH B:1654
binding site for Poly-Saccharide residues NAG B 1008 through NAG B 1009 bound to ASN B 622
23
AE5
SOFTWARE
ASN B:646 , SER B:648 , VAL B:649 , HOH B:1129 , HOH B:1138
binding site for Mono-Saccharide NAG B 1010 bound to ASN B 646
24
AE6
SOFTWARE
ASN C:82 , ILE C:104 , GLU C:172 , GLU C:263 , NAG C:1003 , HOH C:1440
binding site for Mono-Saccharide NAG C 1010 bound to ASN C 82
25
AE7
SOFTWARE
ASN C:124 , GLN C:178 , GLY C:179 , GLU C:180 , HOH C:1107 , HOH C:1251 , HOH C:1290 , HOH C:1565
binding site for Mono-Saccharide NAG C 1002 bound to ASN C 124
26
AE8
SOFTWARE
SER C:80 , ASN C:82 , ARG C:106 , ASN C:229 , THR C:266 , NAG C:1010 , HOH C:1433 , HOH C:1480 , HOH C:1743
binding site for Mono-Saccharide NAG C 1003 bound to ASN C 229
27
AE9
SOFTWARE
LYS C:200 , ASN C:237 , GLU C:281 , HOH C:1123 , HOH C:1203 , HOH C:1243 , HOH C:1617 , HOH C:1671
binding site for Poly-Saccharide residues NAG C 1004 through NAG C 1005 bound to ASN C 237
28
AF1
SOFTWARE
ALA C:223 , PHE C:502 , GLN C:505 , ASN C:506 , HOH C:1111 , HOH C:1126 , HOH C:1137 , HOH C:1537 , HOH C:1568 , HOH C:1854
binding site for Mono-Saccharide NAG C 1006 bound to ASN C 506
29
AF2
SOFTWARE
ASP C:428 , MET C:592 , ASN C:622 , HOH C:1273 , HOH C:1462 , HOH C:1544 , HOH C:1577 , HOH C:1758 , HOH C:1782
binding site for Poly-Saccharide residues NAG C 1007 through NAG C 1008 bound to ASN C 622
30
AF3
SOFTWARE
ASN D:82 , ILE D:104 , GLU D:172 , NAG D:1008 , HOH D:1925
binding site for Mono-Saccharide NAG D 1019 bound to ASN D 82
31
AF4
SOFTWARE
ASN D:124 , GLN D:178 , GLY D:179 , GLU D:180 , HOH D:1194 , HOH D:1591
binding site for Poly-Saccharide residues NAG D 1002 through NAG D 1003 bound to ASN D 124
32
AF5
SOFTWARE
SER D:80 , ASN D:82 , ARG D:106 , ASN D:229 , THR D:266 , NAG D:1019 , HOH D:1149 , HOH D:1227
binding site for Poly-Saccharide residues NAG D 1008 through NAG D 1009 bound to ASN D 229
33
AF6
SOFTWARE
LYS D:200 , ASN D:237 , GLU D:281 , HOH D:1101 , HOH D:1129 , HOH D:1284 , HOH D:1319 , HOH D:1631
binding site for Poly-Saccharide residues NAG D 1010 through NAG D 1011 bound to ASN D 237
34
AF7
SOFTWARE
ASN D:286 , HOH D:1110 , HOH D:1132 , HOH D:1407 , HOH D:1716 , HOH D:1724
binding site for Mono-Saccharide NAG D 1012 bound to ASN D 286
35
AF8
SOFTWARE
MET D:310 , TYR D:311 , ASN D:314 , HOH D:1114
binding site for Mono-Saccharide NAG D 1013 bound to ASN D 314
36
AF9
SOFTWARE
ILE A:371 , LYS A:374 , GLU A:421 , THR A:423 , TRP A:424 , GLU A:742 , GLN A:747 , HOH A:1257 , ASN D:328 , HIS D:500 , HOH D:1108 , HOH D:1169 , HOH D:1178 , HOH D:1191 , HOH D:1255 , HOH D:1306 , HOH D:1640 , HOH D:1657
binding site for Poly-Saccharide residues NAG D 1004 through BMA D 1007 bound to ASN D 328
37
AG1
SOFTWARE
ALA D:223 , PHE D:502 , ASN D:506 , HOH D:1138 , HOH D:1196 , HOH D:1402 , HOH D:1516 , HOH D:1601 , HOH D:1627 , HOH D:1832
binding site for Mono-Saccharide NAG D 1014 bound to ASN D 506
38
AG2
SOFTWARE
ASP D:428 , MET D:592 , ASN D:622 , HOH D:1161 , HOH D:1384 , HOH D:1550 , HOH D:1565 , HOH D:1608 , HOH D:1706
binding site for Poly-Saccharide residues NAG D 1015 through NAG D 1016 bound to ASN D 622
39
AG3
SOFTWARE
ASN D:646 , VAL D:649 , HOH D:1135 , HOH D:1145 , HOH D:1888
binding site for Poly-Saccharide residues NAG D 1017 through NAG D 1018 bound to ASN D 646
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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CATH Domains
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Asym.Unit (1.2 MB)
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