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5LBS
Asym. Unit
Info
Asym.Unit (426 KB)
Biol.Unit 1 (418 KB)
Biol.Unit 2 (416 KB)
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(1)
Title
:
STRUCTURAL BASIS OF ZIKA AND DENGUE VIRUS POTENT ANTIBODY CROSS-NEUTRALIZATION
Authors
:
M. C. Vaney, A. Rouvinski, G. Barba-Spaeth, F. A. Rey
Date
:
17 Jun 16 (Deposition) - 06 Jul 16 (Release) - 17 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.41
Chains
:
Asym. Unit : A,B,H,I,L,M
Biol. Unit 1: A,H,L (2x)
Biol. Unit 2: B,I,M (2x)
Keywords
:
Immune System-Viral Protein Complex, Zika Virus, Broadly Neutralizing Antibody, Immune System-Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Barba-Spaeth, W. Dejnirattisai, A. Rouvinski, M. C. Vaney, I. Medits, A. Sharma, E. Simon-Loriere, A. Sakuntabhai, V. M. Cao-Lormeau, A. Haouz, P. England, K. Stiasny, J. Mongkolsapaya F. X. Heinz, G. R. Screaton, F. A. Rey
Structural Basis Of Potent Zika-Dengue Virus Antibody Cross-Neutralization.
Nature V. 536 48 2016
(for further references see the
PDB file header
)
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Hetero Components
(2, 14)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
View:
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No.
Name
Count
Type
Full Name
1
EDO
11
Ligand/Ion
1,2-ETHANEDIOL
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:323 , ARG A:357 , ASP A:379 , ARG A:402
binding site for residue EDO A 801
02
AC2
SOFTWARE
HIS A:398 , HIS A:399
binding site for residue EDO A 802
03
AC3
SOFTWARE
ILE A:1 , ARG A:164
binding site for residue EDO A 803
04
AC4
SOFTWARE
ARG A:299 , LEU A:300 , GLY A:302 , VAL A:303 , SER A:304 , TYR A:305
binding site for residue SO4 A 804
05
AC5
SOFTWARE
LYS B:340 , TRP B:440 , SER B:441 , ARG M:18
binding site for residue SO4 B 501
06
AC6
SOFTWARE
SER A:66 , ASP A:67 , MET A:68 , GLY H:54
binding site for residue EDO H 201
07
AC7
SOFTWARE
TYR H:32 , TYR H:96 , MET H:100E
binding site for residue EDO H 202
08
AC8
SOFTWARE
TYR I:32 , GLY I:95 , TYR I:96 , MET I:100E
binding site for residue EDO I 201
09
AC9
SOFTWARE
THR H:108 , THR I:107 , THR I:108
binding site for residue SO4 I 202
10
AD1
SOFTWARE
ILE A:317 , ARG L:66 , HOH L:305
binding site for residue EDO L 201
11
AD2
SOFTWARE
ARG L:45 , PRO L:59 , ARG L:61 , GLU L:81
binding site for residue EDO L 202
12
AD3
SOFTWARE
LEU H:45 , GLU H:46 , TYR H:47 , THR L:97 , PHE L:98 , HOH L:303
binding site for residue EDO L 203
13
AD4
SOFTWARE
SER M:67 , THR M:69 , ASP M:70
binding site for residue EDO M 801
14
AD5
SOFTWARE
ILE B:317 , SER M:30 , ARG M:66
binding site for residue EDO M 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (426 KB)
Header - Asym.Unit
Biol.Unit 1 (418 KB)
Header - Biol.Unit 1
Biol.Unit 2 (416 KB)
Header - Biol.Unit 2
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