PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5L9E
Biol. Unit 2
Info
Asym.Unit (369 KB)
Biol.Unit 1 (183 KB)
Biol.Unit 2 (180 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN CARBONIC ANHYDRASE II IN COMPLEX WITH A QUINOLINE OLIGOAMIDE FOLDAMER
Authors
:
M. Vallade, B. Langlois D'Estaintot, T. Granier, I. Huc
Date
:
10 Jun 16 (Deposition) - 21 Jun 17 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Protein-Foldamer Complex, Protein Foldamer Interactions, Modified Inhibitor, Anchored Foldamer, Hcaii Dimerisation, Quinoline Oligoamide Foldamer, Benzene Sulfonamide Modified Inhibitor, Lyase- Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Vallade, L. Fischer, B. Langlois D'Estaintot, T. Granier, I. Huc
Crystal Structure Of Human Carbonic Anhydrase Ii In Complex With A Quinoline Oligoamide Foldamer
To Be Published
[
close entry info
]
Hetero Components
(4, 11)
Info
All Hetero Components
1a: ~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL... (6H0a)
1b: ~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL... (6H0b)
1c: ~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL... (6H0c)
1d: ~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL... (6H0d)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
3a: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJa)
3b: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJb)
3c: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJc)
3d: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJd)
3e: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJe)
3f: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJf)
3g: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJg)
3h: 8-AZANYL-4-(2-METHYLPROPOXY)QUINOL... (QUJh)
4a: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEa)
4b: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEb)
4c: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEc)
4d: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEd)
4e: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEe)
4f: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEf)
4g: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEg)
4h: 8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOX... (QVEh)
5a: ZINC ION (ZNa)
5aa: ZINC ION (ZNaa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
5j: ZINC ION (ZNj)
5k: ZINC ION (ZNk)
5l: ZINC ION (ZNl)
5m: ZINC ION (ZNm)
5n: ZINC ION (ZNn)
5o: ZINC ION (ZNo)
5p: ZINC ION (ZNp)
5q: ZINC ION (ZNq)
5r: ZINC ION (ZNr)
5s: ZINC ION (ZNs)
5t: ZINC ION (ZNt)
5u: ZINC ION (ZNu)
5v: ZINC ION (ZNv)
5w: ZINC ION (ZNw)
5x: ZINC ION (ZNx)
5y: ZINC ION (ZNy)
5z: ZINC ION (ZNz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6H0
2
Ligand/Ion
~{N}-[[3-(4-FORMAMIDOBUTOXY)PHENYL]METHYL]-4-SULFAMOYL-BENZAMIDE
2
GOL
2
Ligand/Ion
GLYCEROL
3
QUJ
3
Ligand/Ion
8-AZANYL-4-(2-METHYLPROPOXY)QUINOLINE-2-CARBOXYLIC ACID
4
QVE
4
Ligand/Ion
8-AZANYL-4-(2-HYDROXY-2-OXOETHYLOXY)QUINOLINE-2-CARBOXYLIC ACID
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(26, 26)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AD2 (SOFTWARE)
04: AD5 (SOFTWARE)
05: AD9 (SOFTWARE)
06: AE1 (SOFTWARE)
07: AE2 (SOFTWARE)
08: AE3 (SOFTWARE)
09: AE4 (SOFTWARE)
10: AE5 (SOFTWARE)
11: AE6 (SOFTWARE)
12: AE7 (SOFTWARE)
13: AE8 (SOFTWARE)
14: AE9 (SOFTWARE)
15: AF1 (SOFTWARE)
16: AF2 (SOFTWARE)
17: AF3 (SOFTWARE)
18: AF4 (SOFTWARE)
19: AG4 (SOFTWARE)
20: AG5 (SOFTWARE)
21: AG6 (SOFTWARE)
22: AG7 (SOFTWARE)
23: AG8 (SOFTWARE)
24: AG9 (SOFTWARE)
25: AH1 (SOFTWARE)
26: AH2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
HIS A:17 , GLU C:26
binding site for residue ZN A 308
02
AC4
SOFTWARE
ASP A:174 , HOH A:443 , HOH C:428
binding site for residue ZN A 309
03
AD2
SOFTWARE
GLU A:233 , LYS C:171 , GLU C:233
binding site for residue ZN A 316
04
AD5
SOFTWARE
HIS B:17 , LYS B:18 , GLU D:26
binding site for residue ZN B 308
05
AD9
SOFTWARE
HIS C:94 , HIS C:96 , HIS C:119 , 6H0 C:302
binding site for residue ZN C 301
06
AE1
SOFTWARE
HIS C:4 , HIS C:64 , QVE C:304 , QVE C:306 , HOH C:401
binding site for residue ZN C 307
07
AE2
SOFTWARE
GLU A:26 , HOH A:413 , HOH A:417 , HIS C:17
binding site for residue ZN C 308
08
AE3
SOFTWARE
ASP C:174 , HOH C:427
binding site for residue ZN C 309
09
AE4
SOFTWARE
GLU B:14 , ASP C:34 , HIS C:36 , HOH C:413
binding site for residue ZN C 310
10
AE5
SOFTWARE
ASN C:62 , ASN C:67 , HIS C:94 , THR C:199
binding site for residue GOL C 311
11
AE6
SOFTWARE
HIS B:10 , HIS C:36 , HOH C:403
binding site for residue ZN C 312
12
AE7
SOFTWARE
HIS D:94 , HIS D:96 , HIS D:119 , 6H0 D:302
binding site for residue ZN D 301
13
AE8
SOFTWARE
HIS D:4 , HIS D:64 , QVE D:304 , QVE D:305
binding site for residue ZN D 306
14
AE9
SOFTWARE
GLU B:26 , HOH B:415 , HIS D:17 , HOH D:402
binding site for residue ZN D 307
15
AF1
SOFTWARE
HOH B:428 , ASP D:174
binding site for residue ZN D 308
16
AF2
SOFTWARE
ASP D:34 , HIS D:36 , HOH D:425
binding site for residue ZN D 309
17
AF3
SOFTWARE
ASN D:62 , ALA D:65 , ASN D:67 , GLN D:92 , 6H0 D:302
binding site for residue GOL D 310
18
AF4
SOFTWARE
GLU B:233 , GLU D:233
binding site for residue ZN D 311
19
AG4
SOFTWARE
HIS B:4 , QUJ B:303 , QUJ B:305 , QVE B:306 , ZN B:307 , HIS D:4 , ASP D:19 , PHE D:20 , LYS D:169 , 6H0 D:302 , QUJ D:303 , QVE D:305 , ZN D:306
binding site for residues QUJ B 312 and QVE D 304
20
AG5
SOFTWARE
ASP B:19 , PHE B:20 , 6H0 B:302 , QUJ B:303 , QVE B:304 , QVE B:306 , HOH B:414 , HIS D:4 , TRP D:5 , ASP D:19 , PHE D:20 , HIS D:64 , 6H0 D:302 , QUJ D:303 , QVE D:304 , ZN D:306
binding site for residues QUJ B 312 and QVE D 305
21
AG6
SOFTWARE
GLN C:92 , HIS C:94 , HIS C:96 , HIS C:119 , PHE C:130 , LEU C:197 , THR C:198 , THR C:199 , TRP C:208 , ZN C:301 , QVE C:304 , QUJ C:305 , QVE C:306
binding site for residues 6H0 C 302 and QUJ C 303
22
AG7
SOFTWARE
HIS C:4 , LYS C:169 , 6H0 C:302 , QUJ C:305 , QVE C:306 , ZN C:307 , HOH C:401
binding site for residues QUJ C 303 and QVE C 304
23
AG8
SOFTWARE
HIS C:4 , ASP C:19 , PHE C:20 , LYS C:169 , 6H0 C:302 , QUJ C:303 , QVE C:306 , ZN C:307 , HOH C:401
binding site for residues QVE C 304 and QUJ C 305
24
AG9
SOFTWARE
HIS C:4 , TRP C:5 , ASP C:19 , PHE C:20 , HIS C:64 , 6H0 C:302 , QUJ C:303 , QVE C:304 , ZN C:307
binding site for residues QUJ C 305 and QVE C 306
25
AH1
SOFTWARE
QUJ B:312 , GLN D:92 , HIS D:94 , HIS D:96 , HIS D:119 , PHE D:130 , LEU D:197 , THR D:198 , THR D:199 , TRP D:208 , ZN D:301 , QVE D:304 , QVE D:305 , GOL D:310 , HOH D:406
binding site for residues 6H0 D 302 and QUJ D 303
26
AH2
SOFTWARE
QUJ B:312 , HIS D:4 , LYS D:169 , 6H0 D:302 , QVE D:305 , ZN D:306
binding site for residues QUJ D 303 and QVE D 304
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (369 KB)
Header - Asym.Unit
Biol.Unit 1 (183 KB)
Header - Biol.Unit 1
Biol.Unit 2 (180 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5L9E
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
