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5L8D
Asym. Unit
Info
Asym.Unit (186 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
X-RAY STRUCTURE OF NIKA FROM ESCHERICHIA COLI IN COMPLEX WITH RU(BIS(PYRZOL-1-YL)ACETATE SCORPIONATE)(CO)2CL
Authors
:
S. Menage, C. Cavazza
Date
:
07 Jun 16 (Deposition) - 29 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Nickel-Binding Protein, Artificial Enzymes, Bio-Inspired Chemistry, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Lopez, L. Rondot, C. Cavazza, M. Iannello, E. Boeri-Erba, N. Burzlaff, F. Strinitz, A. Jorge-Robin, C. Marchi-Delapierre, S. Menage
Efficient Conversion Of Alkenes To Chlorohydrins By A Ru-Based Artificial Enzyme.
Chem. Commun. (Camb. ) V. 53 3579 2017
[
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Hetero Components
(9, 31)
Info
All Hetero Components
1a: BIS(PYRZOL-1-YL)ACETATE SCORPIONAT... (6RPa)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
2g: ACETATE ION (ACTg)
2h: ACETATE ION (ACTh)
2i: ACETATE ION (ACTi)
2j: ACETATE ION (ACTj)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: CARBON MONOXIDE (CMOa)
4b: CARBON MONOXIDE (CMOb)
5a: {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL... (EDTa)
6a: FE (III) ION (FEa)
7a: GLYCEROL (GOLa)
7b: GLYCEROL (GOLb)
7c: GLYCEROL (GOLc)
7d: GLYCEROL (GOLd)
7e: GLYCEROL (GOLe)
7f: GLYCEROL (GOLf)
7g: GLYCEROL (GOLg)
7h: GLYCEROL (GOLh)
7i: GLYCEROL (GOLi)
7j: GLYCEROL (GOLj)
7k: GLYCEROL (GOLk)
7l: GLYCEROL (GOLl)
8a: RUTHENIUM ION (RUa)
9a: SULFATE ION (SO4a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6RP
1
Ligand/Ion
BIS(PYRZOL-1-YL)ACETATE SCORPIONATE
2
ACT
10
Ligand/Ion
ACETATE ION
3
CL
2
Ligand/Ion
CHLORIDE ION
4
CMO
2
Ligand/Ion
CARBON MONOXIDE
5
EDT
1
Ligand/Ion
{[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
6
FE
1
Ligand/Ion
FE (III) ION
7
GOL
12
Ligand/Ion
GLYCEROL
8
RU
1
Ligand/Ion
RUTHENIUM ION
9
SO4
1
Ligand/Ion
SULFATE ION
[
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Sites
(31, 31)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:68 , ASP A:69 , ASP A:70
binding site for residue ACT A 601
02
AC2
SOFTWARE
ASN A:261 , GLU A:262 , LEU A:263 , HOH A:932
binding site for residue ACT A 602
03
AC3
SOFTWARE
ASN A:235 , ALA A:237 , GLN A:423 , HOH A:799 , HOH A:894
binding site for residue ACT A 603
04
AC4
SOFTWARE
ARG A:384 , ARG A:389 , HOH A:763 , LEU B:430 , ARG B:457
binding site for residue SO4 A 604
05
AC5
SOFTWARE
ASN A:220 , GLU A:247 , ARG A:396 , THR A:490 , GOL A:606 , HOH A:709 , HOH A:802 , HOH A:834 , HOH A:915
binding site for residue GOL A 605
06
AC6
SOFTWARE
TRP A:10 , PRO A:11 , GLY A:219 , ASN A:220 , GLY A:222 , LEU A:223 , GOL A:605 , HOH A:792
binding site for residue GOL A 606
07
AC7
SOFTWARE
GLU A:102 , ASN A:105 , LYS A:123 , ASP A:227 , THR A:228 , ARG A:231 , ARG A:412
binding site for residue GOL A 607
08
AC8
SOFTWARE
EDT A:609 , HOH A:703
binding site for residue FE A 608
09
AC9
SOFTWARE
TYR A:22 , MET A:27 , ARG A:97 , TRP A:100 , ARG A:137 , TRP A:398 , FE A:608 , HOH A:703 , HOH A:733 , HOH A:738 , HOH A:834 , HOH A:845 , HOH A:908 , HOH A:923
binding site for residue EDT A 609
10
AD1
SOFTWARE
GLN A:361 , SER A:372 , LEU A:373
binding site for residue ACT A 610
11
AD2
SOFTWARE
ASN A:149 , LYS A:157
binding site for residue ACT A 611
12
AD3
SOFTWARE
LYS A:335 , HOH A:947 , ARG B:341
binding site for residue ACT A 612
13
AD4
SOFTWARE
ALA A:158 , LEU A:167 , GLN A:168 , HOH A:759 , THR B:211 , ASP B:213
binding site for residue GOL A 613
14
AD5
SOFTWARE
PRO A:327 , ALA A:328 , HOH A:863 , ARG B:365 , GLN B:366
binding site for residue GOL A 614
15
AD6
SOFTWARE
LYS A:316 , HOH A:737 , LYS B:354
binding site for residue GOL A 615
16
AD7
SOFTWARE
ARG A:89 , LEU A:92 , ARG A:95 , ILE A:107 , VAL A:108 , ASP A:109 , VAL A:110 , ASN A:281 , HOH A:957
binding site for residue GOL A 616
17
AD8
SOFTWARE
THR A:23 , GLN A:26 , HOH A:795 , HOH A:920
binding site for residue ACT A 617
18
AD9
SOFTWARE
ASN A:75 , GLY A:76 , PRO B:225 , ASP B:227
binding site for residue ACT B 601
19
AE1
SOFTWARE
SER B:243 , ILE B:246 , TYR B:485 , ALA B:486 , HOH B:703 , HOH B:710 , HOH B:731 , HOH B:743
binding site for residue GOL B 602
20
AE2
SOFTWARE
TRP B:10 , PRO B:11 , GLY B:219 , ASN B:220 , GLY B:222 , LEU B:223 , GOL B:604 , HOH B:725 , HOH B:884
binding site for residue GOL B 603
21
AE3
SOFTWARE
ASN B:220 , GLU B:247 , ARG B:396 , ALA B:489 , THR B:490 , GOL B:603 , HOH B:706 , HOH B:709
binding site for residue GOL B 604
22
AE4
SOFTWARE
HOH B:866
binding site for residue ACT B 605
23
AE5
SOFTWARE
CL B:607 , 6RP B:608 , CMO B:611 , CMO B:612
binding site for residue RU B 606
24
AE6
SOFTWARE
RU B:606 , 6RP B:608 , CMO B:611 , CMO B:612 , HOH B:920 , HOH B:951
binding site for residue CL B 607
25
AE7
SOFTWARE
TYR B:22 , MET B:27 , TRP B:100 , ARG B:137 , TRP B:398 , TYR B:402 , RU B:606 , CL B:607 , CMO B:611 , CMO B:612 , HOH B:769
binding site for residue 6RP B 608
26
AE8
SOFTWARE
ASN B:274 , LYS B:275 , LYS B:276 , SER B:308 , GLN B:309 , TYR B:310 , HOH B:702 , HOH B:859
binding site for residue GOL B 609
27
AE9
SOFTWARE
MET B:27 , PHE B:28 , THR B:490 , HOH B:943 , HOH B:976
binding site for residue CL B 610
28
AF1
SOFTWARE
ARG B:137 , RU B:606 , CL B:607 , 6RP B:608 , CMO B:612
binding site for residue CMO B 611
29
AF2
SOFTWARE
RU B:606 , CL B:607 , 6RP B:608 , CMO B:611
binding site for residue CMO B 612
30
AF3
SOFTWARE
THR B:23 , GLN B:26 , HOH B:951
binding site for residue ACT B 613
31
AF4
SOFTWARE
THR A:23 , ARG A:97 , LYS B:314 , HOH B:701 , HOH B:707
binding site for residue GOL B 614
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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Asym.Unit (186 KB)
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