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5L7F
Asym. Unit
Info
Asym.Unit (77 KB)
Biol.Unit 1 (36 KB)
Biol.Unit 2 (36 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MMP12 MUTANT K421A IN COMPLEX WITH RXP470.1 CONJUGATED WITH FLUOROPHORE CY5,5 IN SPACE GROUP P21.
Authors
:
L. Tepshi, T. Bordenave, C. Rouanet-Mehouas, L. Devel, V. Dive, E. A. St
Date
:
03 Jun 16 (Deposition) - 14 Sep 16 (Release) - 26 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Probes For Optical Imaging, Mmp-12, Metalloprotease, Inflammation, Aneurysm, Fluorophore, Cy5, 5, Cyanine, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Bordenave, M. Helle, F. Beau, D. Georgiadis, L. Tepshi, M. Bernes, Y. Ye, L. Levenez, E. Poquet, H. Nozach, M. Razavian, J. Toczek, E. A. Stura, V. Dive, M. M. Sadeghi, L. Devel
Synthesis And In Vitro And In Vivo Evaluation Of Mmp-12 Selective Optical Probes.
Bioconjug. Chem. V. 27 2407 2016
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Hetero Components
(8, 20)
Info
All Hetero Components
1a: CY5.5-PEG2 (6PJa)
1b: CY5.5-PEG2 (6PJb)
2a: BROMIDE ION (BRa)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
3c: CALCIUM ION (CAc)
3d: CALCIUM ION (CAd)
3e: CALCIUM ION (CAe)
3f: CALCIUM ION (CAf)
4a: DIMETHYL SULFOXIDE (DMSa)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
6a: GLYCEROL (GOLa)
7a: N-[(2S)-3-[(S)-(4-BROMOPHENYL)(HYD... (R47a)
7b: N-[(2S)-3-[(S)-(4-BROMOPHENYL)(HYD... (R47b)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
8c: ZINC ION (ZNc)
8d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
6PJ
2
Ligand/Ion
CY5.5-PEG2
2
BR
1
Ligand/Ion
BROMIDE ION
3
CA
6
Ligand/Ion
CALCIUM ION
4
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
5
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
6
GOL
1
Ligand/Ion
GLYCEROL
7
R47
2
Ligand/Ion
N-[(2S)-3-[(S)-(4-BROMOPHENYL)(HYDROXY)PHOSPHORYL]-2-{[3-(3'-CHLOROBIPHENYL-4-YL)-1,2-OXAZOL-5-YL]METHYL}PROPANOYL]-L-ALPHA-GLUTAMYL-L-ALPHA-GLUTAMINE
8
ZN
4
Ligand/Ion
ZINC ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:218 , HIS A:222 , HIS A:228 , R47 A:310
binding site for residue ZN A 301
02
AC2
SOFTWARE
HIS A:168 , ASP A:170 , HIS A:183 , HIS A:196
binding site for residue ZN A 302
03
AC3
SOFTWARE
ASP A:175 , GLY A:176 , GLY A:178 , ILE A:180 , ASP A:198 , GLU A:201
binding site for residue CA A 303
04
AC4
SOFTWARE
ASP A:158 , GLY A:190 , GLY A:192 , ASP A:194 , HOH A:438 , HOH A:447
binding site for residue CA A 304
05
AC5
SOFTWARE
ASP A:124 , GLU A:199 , GLU A:201 , HOH A:532 , HOH A:533
binding site for residue CA A 305
06
AC6
SOFTWARE
GLY A:209 , THR A:210 , R47 A:310
binding site for residue EDO A 308
07
AC7
SOFTWARE
PRO A:123 , MET A:125 , ASN A:126
binding site for residue EDO A 309
08
AC8
SOFTWARE
HIS B:218 , HIS B:222 , HIS B:228 , R47 B:306
binding site for residue ZN B 301
09
AC9
SOFTWARE
HIS B:168 , ASP B:170 , HIS B:183 , HIS B:196
binding site for residue ZN B 302
10
AD1
SOFTWARE
ASP B:175 , GLY B:176 , GLY B:178 , ILE B:180 , ASP B:198 , GLU B:201
binding site for residue CA B 303
11
AD2
SOFTWARE
ASP B:158 , GLY B:190 , GLY B:192 , ASP B:194 , HOH B:428 , HOH B:447
binding site for residue CA B 304
12
AD3
SOFTWARE
ASP B:124 , GLU B:199 , GLU B:201 , HOH B:530 , HOH B:540
binding site for residue CA B 305
13
AD4
SOFTWARE
SER A:229 , SER B:229 , SER B:230
binding site for residue EDO B 307
14
AD5
SOFTWARE
LEU B:181 , GLY B:209 , THR B:210 , TYR B:240 , R47 B:306
binding site for residue GOL B 308
15
AD6
SOFTWARE
HIS B:183 , ALA B:184 , PHE B:185 , R47 B:306
binding site for residue DMS B 310
16
AD7
SOFTWARE
SER A:230 , PRO A:232 , LYS A:233 , TYR A:242 , VAL A:243 , ARG A:249 , SER A:251 , ALA A:252 , HOH A:401 , HOH A:407 , HOH A:416 , HOH A:424 , HOH A:453 , HOH A:456 , HOH A:477 , ARG B:110 , LYS B:111 , GLY B:178 , GLY B:179 , ILE B:180 , LEU B:181 , ALA B:182 , THR B:215 , HIS B:218 , GLU B:219 , HIS B:222 , HIS B:228 , PRO B:232 , LYS B:233 , ALA B:234 , VAL B:235 , PHE B:237 , PRO B:238 , THR B:239 , TYR B:240 , ALA B:241 , VAL B:243 , ZN B:301 , GOL B:308 , DMS B:310 , HOH B:441 , HOH B:461 , HOH B:469 , HOH B:506
binding site for residues 6PJ A 306 and R47 B 306
17
AD8
SOFTWARE
VAL A:108 , TRP A:109 , ARG A:110 , PRO A:123 , MET A:125 , ASN A:126 , GLY A:179 , ILE A:180 , LEU A:181 , ALA A:182 , PRO A:187 , GLY A:188 , SER A:189 , THR A:215 , HIS A:218 , GLU A:219 , HIS A:222 , HIS A:228 , PRO A:232 , LYS A:233 , ALA A:234 , VAL A:235 , PHE A:237 , PRO A:238 , THR A:239 , TYR A:240 , ALA A:241 , VAL A:243 , ZN A:301 , EDO A:308 , HOH A:413 , HOH A:415 , HOH A:458 , HOH A:461 , HOH A:499 , HOH A:519 , HOH A:524 , HIS B:183 , ALA B:184 , PHE B:185 , SER B:230 , PRO B:232 , LYS B:233 , THR B:247 , PHE B:248 , ARG B:249 , SER B:251 , ALA B:252 , R47 B:306 , HOH B:403 , HOH B:404 , HOH B:420 , HOH B:449 , HOH B:475 , HOH B:491
binding site for residues R47 A 310 and 6PJ B 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (77 KB)
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Biol.Unit 1 (36 KB)
Header - Biol.Unit 1
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