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5L5F
Asym. Unit
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Asym.Unit (2.1 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
YEAST 20S PROTEASOME WITH HUMAN BETA5I (1-138) AND HUMAN BETA6 (97-111; 118-133) IN COMPLEX WITH BORTEZOMIB
Authors
:
M. Groll, E. M. Huber
Date
:
28 May 16 (Deposition) - 09 Nov 16 (Release) - 14 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b (1x)
Keywords
:
Hydrolase-Hydrolase Inhibitor Complex, Proteasome, Mutant, Inhibitor, Binding Analysis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. M. Huber, W. Heinemeyer, G. De Bruin, H. S. Overkleeft, M. Groll
A Humanized Yeast Proteasome Identifies Unique Binding Mode Of Inhibitors For The Immunosubunit Beta 5I.
Embo J. V. 35 2602 2016
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Hetero Components
(3, 18)
Info
All Hetero Components
1a: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2a)
1b: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2b)
1c: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2c)
1d: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2d)
1e: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2e)
1f: N-[(1R)-1-(DIHYDROXYBORYL)-3-METHY... (BO2f)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BO2
6
Ligand/Ion
N-[(1R)-1-(DIHYDROXYBORYL)-3-METHYLBUTYL]-N-(PYRAZIN-2-YLCARBONYL)-L-PHENYLALANINAMIDE
2
CL
4
Ligand/Ion
CHLORIDE ION
3
MG
8
Ligand/Ion
MAGNESIUM ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR G:8 , TYR G:119 , ARG G:122 , ALA G:123 , MET G:125
binding site for residue MG G 301
02
AC2
SOFTWARE
ARG G:111 , ASN G:114 , TYR H:69
binding site for residue CL G 302
03
AC3
SOFTWARE
THR H:1 , SER H:20 , THR H:21 , GLY H:45 , ALA H:46 , GLY H:47 , ALA H:49 , THR H:52 , HOH H:412 , HOH H:447 , ASP I:124
binding site for residue BO2 H 301
04
AC4
SOFTWARE
ASP I:204 , ARG Y:19 , ALA Y:164 , ASP Y:167 , SER Y:170
binding site for residue MG I 301
05
AC5
SOFTWARE
GLN J:118 , THR J:124
binding site for residue MG J 201
06
AC6
SOFTWARE
THR K:1 , ALA K:20 , SER K:21 , SER K:27 , GLY K:47 , ALA K:49 , HOH K:401 , ASP L:126
binding site for residue BO2 K 301
07
AC7
SOFTWARE
ARG K:19 , ALA K:164 , ASP K:167 , SER K:170 , ASP W:204
binding site for residue MG K 302
08
AC8
SOFTWARE
ASP L:222 , ILE V:163 , ASP V:166 , SER V:169
binding site for residue MG L 301
09
AC9
SOFTWARE
HIS H:114 , SER H:118 , THR N:1 , THR N:20 , THR N:21 , THR N:22 , ARG N:45 , GLY N:47 , ALA N:49
binding site for residue BO2 N 201
10
AD1
SOFTWARE
ILE N:163 , ASP N:166 , SER N:169 , LEU a:34
binding site for residue MG N 202
11
AD2
SOFTWARE
ARG N:45 , GLN N:53
binding site for residue CL N 203
12
AD3
SOFTWARE
ARG U:111 , ASN U:114 , TYR V:69
binding site for residue CL U 301
13
AD4
SOFTWARE
THR Z:192 , HIS Z:195 , VAL Z:198 , HOH Z:406
binding site for residue MG Z 301
14
AD5
SOFTWARE
ARG b:45 , GLN b:53
binding site for residue CL b 202
15
AD6
SOFTWARE
LEU M:34 , ARG b:19 , ILE b:163 , ASP b:166 , SER b:169
binding site for residue MG b 203
16
AD7
SOFTWARE
THR V:2 , ASP V:17 , SER V:20 , THR V:21 , LYS V:33 , GLY V:45 , ALA V:46 , GLY V:47 , ALA V:49 , THR V:52 , GLY V:128 , SER V:129 , GLY V:130 , GLY V:168 , SER V:169 , HOH V:405
binding site for Di-peptide BO2 V 301 and THR V 1
17
AD8
SOFTWARE
THR Y:2 , ASP Y:17 , ALA Y:20 , SER Y:21 , SER Y:27 , LYS Y:33 , MET Y:45 , GLY Y:47 , ALA Y:49 , GLY Y:129 , SER Y:130 , GLY Y:131 , TYR Y:169 , SER Y:170 , ASP Z:126
binding site for Di-peptide BO2 Y 301 and THR Y 1
18
AD9
SOFTWARE
HIS V:114 , SER V:118 , SER b:2 , ASP b:17 , THR b:20 , THR b:21 , THR b:22 , LYS b:33 , ARG b:45 , GLY b:47 , ALA b:49 , GLY b:128 , SER b:129 , GLY b:130 , ASP b:166 , SER b:168 , SER b:169 , HOH b:318
binding site for Di-peptide BO2 b 201 and THR b 1
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SAPs(SNPs)/Variants
(0, 0)
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Asym.Unit (2.1 MB)
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