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5L3H
Asym. Unit
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Asym.Unit (47 KB)
Biol.Unit 1 (43 KB)
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(1)
Title
:
RE-REFINEMENT OF 4DD4; CISPLATIN COORDINATION CHEMISTRY DETERMINATION AT HEN EGG WHITE LYSOZYME HIS15 WITH STANDARD UNCERTAINTIES
Authors
:
J. R. Helliwell, S. W. M. Tanley
Date
:
06 May 16 (Deposition) - 15 Jun 16 (Release) - 28 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
4Dd4 Re-Refinement; Platinum Coordination Geometries; Histidine In Hen Egg White Lysozyme; Platinum Ligand Distances And Angles Standard Uncertainties, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Helliwell, A. M. M. Schreurs, L. M. J. Kroon-Batenburg, S. Tanley
Cisplatin Coordination Chemistry Determination At Hen Egg White Lysozyme His15 With Ligand Distances And Angles, And Their Standard Uncertainties, And Also Reporting A Split Occupancy Effect
Arxiv 2016
(for further references see the
PDB file header
)
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
2a: DIMETHYL SULFOXIDE (DMSa)
3a: SODIUM ION (NAa)
4a: AMMONIA (NH3a)
4b: AMMONIA (NH3b)
4c: AMMONIA (NH3c)
5a: PLATINUM (II) ION (PTa)
5b: PLATINUM (II) ION (PTb)
5c: PLATINUM (II) ION (PTc)
5d: PLATINUM (II) ION (PTd)
5e: PLATINUM (II) ION (PTe)
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Label:
No.
Name
Count
Type
Full Name
1
CL
7
Ligand/Ion
CHLORIDE ION
2
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
3
NA
1
Ligand/Ion
SODIUM ION
4
NH3
3
Ligand/Ion
AMMONIA
5
PT
5
Ligand/Ion
PLATINUM (II) ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:65 , GLY A:67 , ARG A:68 , THR A:69 , SER A:72
binding site for residue CL A 201
02
AC2
SOFTWARE
SER A:60 , CYS A:64 , SER A:72 , ARG A:73 , HOH A:339 , HOH A:344
binding site for residue NA A 202
03
AC3
SOFTWARE
HIS A:15 , CL A:205 , NH3 A:207 , NH3 A:208
binding site for residue PT A 203
04
AC4
SOFTWARE
ARG A:14 , HIS A:15 , CL A:206 , NH3 A:209
binding site for residue PT A 204
05
AC5
SOFTWARE
HIS A:15 , ASN A:93 , PT A:203 , NH3 A:208
binding site for residue CL A 205
06
AC6
SOFTWARE
HIS A:15 , ILE A:88 , PT A:204 , NH3 A:209
binding site for residue CL A 206
07
AC7
SOFTWARE
HIS A:15 , PT A:203 , NH3 A:208
binding site for residue NH3 A 207
08
AC8
SOFTWARE
PT A:203 , CL A:205 , NH3 A:207
binding site for residue NH3 A 208
09
AC9
SOFTWARE
ARG A:14 , PT A:204 , CL A:206
binding site for residue NH3 A 209
10
AD1
SOFTWARE
ASN A:65 , PRO A:79
binding site for residue CL A 210
11
AD2
SOFTWARE
LYS A:33 , PHE A:38
binding site for residue CL A 211
12
AD3
SOFTWARE
TYR A:23 , ASN A:113
binding site for residue CL A 212
13
AD4
SOFTWARE
SER A:24 , GLY A:26 , GLN A:121 , ILE A:124
binding site for residue CL A 213
14
AD5
SOFTWARE
GLN A:57 , ILE A:58 , ASN A:59 , TRP A:63 , TRP A:108
binding site for residue DMS A 214
15
AD6
SOFTWARE
LYS A:1
binding site for residue PT A 215
16
AD7
SOFTWARE
LYS A:96
binding site for residue PT A 216
17
AD8
SOFTWARE
LYS A:33 , ASN A:37
binding site for residue PT A 217
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 4DD4: 1,1)
Info
All SCOP Domains
1a: SCOP_d4dd4a_ ()
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (47 KB)
Header - Asym.Unit
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