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5L2K
Asym. Unit
Info
Asym.Unit (142 KB)
Biol.Unit 1 (135 KB)
Biol.Unit 2 (525 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GEM42 TCR-CD1B-GMM COMPLEX
Authors
:
S. Gras, A. Shahine, J. Le Nours, J. Rossjohn
Date
:
02 Aug 16 (Deposition) - 16 Nov 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B,D,E (1x)
Biol. Unit 2: A,B,D,E (4x)
Keywords
:
Cd1B, Lipid, Tb, Mtb, Gmm, Tuberculosis, Gem T Cell, Tcr, T Cell, Gem42, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Gras, I. Van Rhijn, A. Shahine, T. Y. Cheng, M. Bhati, L. L. Tan, H. Halim, K. D. Tuttle, L. Gapin, J. Le Nours, D. B. Moody, J. Rossjohn
T Cell Receptor Recognition Of Cd1B Presenting A Mycobacterial Glycolipid.
Nat Commun V. 7 13257 2016
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Hetero Components
(7, 17)
Info
All Hetero Components
1a: TETRACOSYL PALMITATE (6ULa)
2a: 6-O-[(2R,3R)-3-HYDROXY-2-TETRADECY... (70Ea)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
3d: CHLORIDE ION (CLd)
4a: CESIUM ION (CSa)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
7a: SULFATE ION (SO4a)
7b: SULFATE ION (SO4b)
7c: SULFATE ION (SO4c)
7d: SULFATE ION (SO4d)
7e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6UL
1
Ligand/Ion
TETRACOSYL PALMITATE
2
70E
1
Ligand/Ion
6-O-[(2R,3R)-3-HYDROXY-2-TETRADECYLDOCOSANOYL]-ALPHA-L-IDOPYRANOSE
3
CL
4
Ligand/Ion
CHLORIDE ION
4
CS
1
Ligand/Ion
CESIUM ION
5
NA
2
Ligand/Ion
SODIUM ION
6
NAG
3
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:57 , LYS A:61 , NAG A:401 , GLN D:2
binding site for residue SO4 A 404
02
AC2
SOFTWARE
PHE A:75 , ARG A:79 , LYS E:84 , ARG E:109 , GLU E:231
binding site for residue SO4 A 405
03
AC3
SOFTWARE
ARG A:159 , NAG A:403 , PHE D:30 , ARG D:84A
binding site for residue SO4 A 406
04
AC4
SOFTWARE
SER A:139
binding site for residue CL A 407
05
AC5
SOFTWARE
THR A:8 , LEU A:104
binding site for residue CL A 409
06
AC6
SOFTWARE
GLN A:231 , ARG A:246 , THR A:248
binding site for residue NA A 410
07
AC7
SOFTWARE
ILE A:13 , TRP A:40 , TYR A:73 , ILE A:96 , ALA A:117 , PHE A:123 , LEU A:124 , PHE A:144
binding site for residue 6UL A 411
08
AC8
SOFTWARE
LYS B:43 , PHE B:72 , THR B:73
binding site for residue CL B 201
09
AC9
SOFTWARE
PRO D:8 , THR D:9 , GLU D:10
binding site for residue SO4 D 301
10
AD1
SOFTWARE
GLN E:237 , ASP E:238 , ARG E:239
binding site for residue SO4 E 301
11
AD2
SOFTWARE
HIS E:179
binding site for residue NA E 302
12
AD3
SOFTWARE
PHE A:10 , HIS A:38 , VAL A:72 , TYR A:73 , GLY A:76 , PHE A:77 , CYS A:131 , GLY A:153 , ILE A:154 , LEU A:161 , TYR A:169 , ASN D:31 , ARG D:107 , GLY D:111 , GLY D:112 , TYR E:31 , ARG E:109 , LEU E:110 , ALA E:111 , GLY E:112 , ASP E:113
binding site for residue 70E E 303
13
AD4
SOFTWARE
ASN A:20 , THR A:22 , TRP A:23
binding site for Mono-Saccharide NAG A 402 bound to ASN A 20
14
AD5
SOFTWARE
ASN A:57 , PHE A:58 , ARG A:168 , SO4 A:404 , GLN D:2 , ASN D:3
binding site for Mono-Saccharide NAG A 401 bound to ASN A 57
15
AD6
SOFTWARE
ASN A:128 , ARG A:159 , SO4 A:406 , ASP D:59 , ARG D:84A
binding site for Mono-Saccharide NAG A 403 bound to ASN A 128
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (142 KB)
Header - Asym.Unit
Biol.Unit 1 (135 KB)
Header - Biol.Unit 1
Biol.Unit 2 (525 KB)
Header - Biol.Unit 2
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