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5L13
Biol. Unit 1
Info
Asym.Unit (659 KB)
Biol.Unit 1 (333 KB)
Biol.Unit 2 (327 KB)
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(1)
Title
:
STRUCTURE OF ALDH2 IN COMPLEX WITH 2P3
Authors
:
C. D. Buchman, T. D. Hurley
Date
:
28 Jul 16 (Deposition) - 08 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase-Oxidoreductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. D. Buchman, T. D. Hurley
Inhibition Of The Aldehyde Dehydrogenase 1/2 Family By Psoralen And Coumarin Derivatives.
J. Med. Chem. V. 60 2439 2017
[
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEa)
1b: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEb)
1c: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEc)
1d: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEd)
1e: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEe)
1f: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEf)
1g: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEg)
1h: 2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3... (6ZEh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
2j: 1,2-ETHANEDIOL (EDOj)
2k: 1,2-ETHANEDIOL (EDOk)
2l: 1,2-ETHANEDIOL (EDOl)
3a: GUANIDINE (GAIa)
3b: GUANIDINE (GAIb)
3c: GUANIDINE (GAIc)
3d: GUANIDINE (GAId)
3e: GUANIDINE (GAIe)
3f: GUANIDINE (GAIf)
3g: GUANIDINE (GAIg)
3h: GUANIDINE (GAIh)
3i: GUANIDINE (GAIi)
3j: GUANIDINE (GAIj)
3k: GUANIDINE (GAIk)
3l: GUANIDINE (GAIl)
3m: GUANIDINE (GAIm)
3n: GUANIDINE (GAIn)
3o: GUANIDINE (GAIo)
3p: GUANIDINE (GAIp)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
4e: SODIUM ION (NAe)
4f: SODIUM ION (NAf)
4g: SODIUM ION (NAg)
4h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6ZE
4
Ligand/Ion
2,3,5-TRIMETHYL-6-PROPYL-7H-FURO[3,2-G][1]BENZOPYRAN-7-ONE
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GAI
8
Ligand/Ion
GUANIDINE
4
NA
-1
Ligand/Ion
SODIUM ION
[
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Sites
(21, 21)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196 , HOH A:707
binding site for residue NA A 601
02
AC2
SOFTWARE
TYR A:153 , ARG A:155 , ASN B:440 , SER B:443 , GLN B:444 , PHE D:151
binding site for residue EDO A 602
03
AC3
SOFTWARE
PHE A:18 , ASP A:98 , TYR A:101 , TYR A:203 , HOH A:712
binding site for residue EDO A 603
04
AC4
SOFTWARE
GLU A:157 , PRO A:158 , VAL A:159 , TYR B:468
binding site for residue GAI A 604
05
AC5
SOFTWARE
PHE A:459 , HOH A:756 , ASP B:147 , PHE B:150
binding site for residue GAI A 605
06
AC6
SOFTWARE
PHE A:170 , MET A:174 , PHE A:296 , CYS A:301 , CYS A:302 , CYS A:303 , ASP A:457 , PHE A:459
binding site for residue 6ZE A 606
07
AC7
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196
binding site for residue NA B 601
08
AC8
SOFTWARE
ASN A:440 , SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
binding site for residue EDO B 602
09
AC9
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , ASN D:440 , SER D:443
binding site for residue EDO B 603
10
AD1
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159
binding site for residue GAI B 604
11
AD2
SOFTWARE
PHE B:170 , MET B:174 , TRP B:177 , PHE B:296 , CYS B:301 , CYS B:302 , CYS B:303 , ASP B:457 , PHE B:459
binding site for residue 6ZE B 605
12
AD3
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:880
binding site for residue NA C 601
13
AD4
SOFTWARE
GLU C:157 , PRO C:158 , VAL C:159 , HOH C:882 , HOH C:884 , GLN D:447 , TYR D:468
binding site for residue GAI C 602
14
AD5
SOFTWARE
VAL C:120 , MET C:124 , PHE C:170 , MET C:174 , PHE C:296 , CYS C:301 , CYS C:302 , CYS C:303 , ASP C:457 , PHE C:459
binding site for residue 6ZE C 603
15
AD6
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:795 , HOH D:832
binding site for residue NA D 601
16
AD7
SOFTWARE
PHE D:18 , TYR D:101 , TYR D:203
binding site for residue EDO D 602
17
AD8
SOFTWARE
PHE C:459 , ILE D:146 , ASP D:147 , PHE D:150
binding site for residue GAI D 603
18
AD9
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:737
binding site for residue GAI D 604
19
AE1
SOFTWARE
PRO D:167 , TRP D:168 , ASN D:169
binding site for residue GAI D 605
20
AE2
SOFTWARE
ASP C:147 , PHE D:459 , HOH D:826
binding site for residue GAI D 606
21
AE3
SOFTWARE
MET D:124 , PHE D:170 , MET D:174 , TRP D:177 , GLU D:268 , PHE D:296 , CYS D:301 , CYS D:302 , CYS D:303 , ASP D:457 , PHE D:459 , PHE D:465
binding site for residue 6ZE D 607
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (659 KB)
Header - Asym.Unit
Biol.Unit 1 (333 KB)
Header - Biol.Unit 1
Biol.Unit 2 (327 KB)
Header - Biol.Unit 2
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