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5KV8
Asym. Unit
Info
Asym.Unit (163 KB)
Biol.Unit 1 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A HPIV HAEMAGGLUTININ-NEURAMINIDASE-INHIBITOR COMPLEX
Authors
:
L. Dirr, I. M. El-Deeb, L. M. G. Chavas, P. Guillon, M. Von Itzstein
Date
:
13 Jul 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Haemagglutinin-Neuraminidase, Hydrolase, Viral Protein, Host Cell Surface Receptor Binding, Hydrolase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Dirr, I. M. El-Deeb, L. M. G. Chavas, P. Guillon, M. V. Itzstein
The Impact Of The Butterfly Effect On Human Parainfluenza Virus Haemagglutinin-Neuraminidase Inhibitor Design.
Sci Rep V. 7 4507 2017
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Hetero Components
(9, 24)
Info
All Hetero Components
1a: (2~{R},3~{R},4~{S})-4-[4-(METHOXYM... (6Y6a)
1b: (2~{R},3~{R},4~{S})-4-[4-(METHOXYM... (6Y6b)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: CALCIUM ION (CAa)
3b: CALCIUM ION (CAb)
4a: CITRIC ACID (CITa)
5a: 1,2-ETHANEDIOL (EDOa)
5b: 1,2-ETHANEDIOL (EDOb)
5c: 1,2-ETHANEDIOL (EDOc)
5d: 1,2-ETHANEDIOL (EDOd)
5e: 1,2-ETHANEDIOL (EDOe)
5f: 1,2-ETHANEDIOL (EDOf)
6a: GLYCEROL (GOLa)
7a: ALPHA-D-MANNOSE (MANa)
8a: N-ACETYL-D-GLUCOSAMINE (NAGa)
8b: N-ACETYL-D-GLUCOSAMINE (NAGb)
8c: N-ACETYL-D-GLUCOSAMINE (NAGc)
8d: N-ACETYL-D-GLUCOSAMINE (NAGd)
8e: N-ACETYL-D-GLUCOSAMINE (NAGe)
8f: N-ACETYL-D-GLUCOSAMINE (NAGf)
8g: N-ACETYL-D-GLUCOSAMINE (NAGg)
8h: N-ACETYL-D-GLUCOSAMINE (NAGh)
9a: SULFATE ION (SO4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6Y6
2
Ligand/Ion
(2~{R},3~{R},4~{S})-4-[4-(METHOXYMETHYL)-1,2,3-TRIAZOL-1-YL]-3-(2-METHYLPROPANOYLAMINO)-2-[(1~{R},2~{R})-1,2,3-TRIS(OXIDANYL)PROPYL]-3,4-DIHYDRO-2~{H}-PYRAN-6-CARBOXYLIC ACID
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
CA
2
Ligand/Ion
CALCIUM ION
4
CIT
1
Ligand/Ion
CITRIC ACID
5
EDO
6
Ligand/Ion
1,2-ETHANEDIOL
6
GOL
1
Ligand/Ion
GLYCEROL
7
MAN
1
Ligand/Ion
ALPHA-D-MANNOSE
8
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
9
SO4
1
Ligand/Ion
SULFATE ION
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:351 , THR A:353 , TRP A:451 , NAG A:602
binding site for residue NAG A 601
02
AC2
SOFTWARE
TRP A:451 , NAG A:601 , BMA A:604
binding site for residue NAG A 602
03
AC3
SOFTWARE
ARG A:522 , ASN A:523 , HOH A:717 , HOH A:838 , HOH A:932
binding site for residue NAG A 603
04
AC4
SOFTWARE
NAG A:602 , HOH A:707 , HOH A:975
binding site for residue BMA A 604
05
AC5
SOFTWARE
ASP A:279 , SER A:282 , GLY A:284 , ALA A:316 , HOH A:735
binding site for residue CA A 605
06
AC6
SOFTWARE
ARG A:192 , THR A:193 , ASN A:208 , ILE A:210 , LYS A:254 , GLU A:276 , TYR A:319 , TYR A:337 , GLU A:409 , ARG A:424 , ARG A:502 , TYR A:530 , HOH A:727 , HOH A:768 , HOH A:803 , HOH A:842 , HOH A:849 , HOH A:865 , HOH A:973
binding site for residue 6Y6 A 606
07
AC7
SOFTWARE
TYR A:266 , GLY A:330 , LYS A:331 , ILE A:332 , VAL A:384
binding site for residue EDO A 607
08
AC8
SOFTWARE
ASP A:497 , GLN A:499 , ARG A:515 , HOH A:733
binding site for residue EDO A 608
09
AC9
SOFTWARE
PHE A:247 , ASN A:248 , HOH A:763 , SER B:233
binding site for residue EDO A 609
10
AD1
SOFTWARE
THR A:302 , ARG A:303 , ASN A:308 , HOH A:723
binding site for residue NAG A 610
11
AD2
SOFTWARE
SER A:244 , HIS A:245 , THR A:246 , HOH A:720 , HOH A:738 , HOH A:763 , HOH A:960 , THR B:230 , VAL B:231 , ASP B:238
binding site for residue CIT A 611
12
AD3
SOFTWARE
ASN B:351 , TRP B:451 , NAG B:602 , HOH B:701
binding site for residue NAG B 601
13
AD4
SOFTWARE
LYS A:273 , LYS A:305 , TRP B:451 , NAG B:601 , BMA B:604
binding site for residue NAG B 602
14
AD5
SOFTWARE
ASN B:523 , THR B:525 , HOH B:702 , HOH B:772
binding site for residue NAG B 603
15
AD6
SOFTWARE
NAG B:602 , MAN B:612
binding site for residue BMA B 604
16
AD7
SOFTWARE
ASP B:279 , SER B:282 , GLY B:284 , ALA B:316 , HOH B:738
binding site for residue CA B 605
17
AD8
SOFTWARE
ARG B:192 , THR B:193 , ASN B:208 , ILE B:210 , CYS B:214 , LYS B:254 , GLU B:276 , TYR B:319 , TYR B:337 , GLU B:409 , ARG B:424 , ARG B:502 , TYR B:530 , HOH B:767 , HOH B:881
binding site for residue 6Y6 B 606
18
AD9
SOFTWARE
TRP B:465 , ASP B:497 , GLN B:499 , HOH B:915
binding site for residue EDO B 607
19
AE1
SOFTWARE
TYR B:266 , GLY B:330 , LYS B:331 , ILE B:332 , VAL B:384
binding site for residue EDO B 608
20
AE2
SOFTWARE
ASN A:460 , ASN A:461 , HOH A:964 , PRO B:356 , HOH B:778
binding site for residue EDO B 609
21
AE3
SOFTWARE
HIS A:552 , LYS A:553 , SER A:554 , HIS B:552 , LYS B:553 , SER B:554 , LEU B:555 , HOH B:707
binding site for residue SO4 B 610
22
AE4
SOFTWARE
THR B:302 , ARG B:303 , ASN B:308 , HOH B:820
binding site for residue NAG B 611
23
AE5
SOFTWARE
TRP B:451 , THR B:513 , BMA B:604 , HOH B:842 , HOH B:844
binding site for residue MAN B 612
24
AE6
SOFTWARE
THR A:230 , VAL A:231 , ASN A:240 , SER B:244 , HIS B:245 , THR B:246 , HOH B:708 , HOH B:742
binding site for residue GOL B 613
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (163 KB)
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