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5KTJ
Biol. Unit 2
Info
Asym.Unit (134 KB)
Biol.Unit 1 (64 KB)
Biol.Unit 2 (64 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PISTOL, A CLASS OF SELF-CLEAVING RIBOZYME
Authors
:
L. A. Nguyen, J. Wang, T. A. Steitz
Date
:
11 Jul 16 (Deposition) - 05 Oct 16 (Release) - 15 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.97
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Ribozyme, Self-Cleavage, Internal Transesterification, Rna
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. A. Nguyen, J. Wang, T. A. Steitz
Crystal Structure Of Pistol, A Class Of Self-Cleaving Ribozyme.
Proc. Natl. Acad. Sci. V. 114 1021 2017 U. S. A.
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
2c: MAGNESIUM ION (MGc)
2d: MAGNESIUM ION (MGd)
2e: MAGNESIUM ION (MGe)
2f: MAGNESIUM ION (MGf)
2g: MAGNESIUM ION (MGg)
2h: MAGNESIUM ION (MGh)
2i: MAGNESIUM ION (MGi)
2j: MAGNESIUM ION (MGj)
2k: MAGNESIUM ION (MGk)
2l: MAGNESIUM ION (MGl)
2m: MAGNESIUM ION (MGm)
2n: MAGNESIUM ION (MGn)
2o: MAGNESIUM ION (MGo)
2p: MAGNESIUM ION (MGp)
2q: MAGNESIUM ION (MGq)
2r: MAGNESIUM ION (MGr)
2s: MAGNESIUM ION (MGs)
3a: COBALT HEXAMMINE(III) (NCOa)
3b: COBALT HEXAMMINE(III) (NCOb)
3c: COBALT HEXAMMINE(III) (NCOc)
3d: COBALT HEXAMMINE(III) (NCOd)
3e: COBALT HEXAMMINE(III) (NCOe)
3f: COBALT HEXAMMINE(III) (NCOf)
3g: COBALT HEXAMMINE(III) (NCOg)
3h: COBALT HEXAMMINE(III) (NCOh)
3i: COBALT HEXAMMINE(III) (NCOi)
3j: COBALT HEXAMMINE(III) (NCOj)
4a: SAMARIUM (III) ION (SMa)
4b: SAMARIUM (III) ION (SMb)
4c: SAMARIUM (III) ION (SMc)
4d: SAMARIUM (III) ION (SMd)
4e: SAMARIUM (III) ION (SMe)
4f: SAMARIUM (III) ION (SMf)
4g: SAMARIUM (III) ION (SMg)
4h: SAMARIUM (III) ION (SMh)
4i: SAMARIUM (III) ION (SMi)
4j: SAMARIUM (III) ION (SMj)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
1
Mod. Nucleotide
ADENOSINE-5'-TRIPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
3
NCO
4
Ligand/Ion
COBALT HEXAMMINE(III)
4
SM
-1
Ligand/Ion
SAMARIUM (III) ION
[
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Sites
(27, 27)
Info
All Sites
01: AC2 (SOFTWARE)
02: AC3 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AD1 (SOFTWARE)
05: AD3 (SOFTWARE)
06: AD4 (SOFTWARE)
07: AD5 (SOFTWARE)
08: AD7 (SOFTWARE)
09: AD8 (SOFTWARE)
10: AE2 (SOFTWARE)
11: AE3 (SOFTWARE)
12: AE4 (SOFTWARE)
13: AE5 (SOFTWARE)
14: AE6 (SOFTWARE)
15: AE7 (SOFTWARE)
16: AE8 (SOFTWARE)
17: AE9 (SOFTWARE)
18: AF1 (SOFTWARE)
19: AF2 (SOFTWARE)
20: AF3 (SOFTWARE)
21: AF4 (SOFTWARE)
22: AF5 (SOFTWARE)
23: AF6 (SOFTWARE)
24: AF7 (SOFTWARE)
25: AF8 (SOFTWARE)
26: AF9 (SOFTWARE)
27: AG1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC2
SOFTWARE
C A:22 , A A:23 , G C:50
binding site for residue SM A 102
02
AC3
SOFTWARE
G A:32 , SM C:102
binding site for residue SM A 103
03
AC4
SOFTWARE
U C:30
binding site for residue SM A 104
04
AD1
SOFTWARE
A A:49 , G A:50 , U C:30 , G C:32
binding site for residue NCO A 111
05
AD3
SOFTWARE
A A:46 , G A:47 , U C:29 , U C:30 , A C:31
binding site for residue NCO A 113
06
AD4
SOFTWARE
A A:14 , G A:15 , U A:16 , A C:14 , G C:15 , U C:16
binding site for residue NCO A 114
07
AD5
SOFTWARE
HOH A:210 , HOH A:213 , HOH B:201 , HOH B:202 , HOH B:203 , HOH D:201
binding site for residue MG A 115
08
AD7
SOFTWARE
A A:31 , A A:44 , HOH A:201 , HOH A:202 , HOH A:203 , HOH A:207 , HOH D:202 , HOH D:203
binding site for residue MG A 117
09
AD8
SOFTWARE
HOH A:206 , HOH A:214 , HOH A:217 , HOH C:201 , HOH C:213 , HOH C:222
binding site for residue MG A 118
10
AE2
SOFTWARE
C C:41 , G C:42 , HOH C:202 , HOH C:204 , HOH C:220
binding site for residue SM C 101
11
AE3
SOFTWARE
SM A:103 , G C:50
binding site for residue SM C 102
12
AE4
SOFTWARE
A A:31 , C D:13
binding site for residue SM C 103
13
AE5
SOFTWARE
A C:31
binding site for residue MG C 105
14
AE6
SOFTWARE
A C:44
binding site for residue MG C 106
15
AE7
SOFTWARE
G C:47
binding site for residue MG C 107
16
AE8
SOFTWARE
G C:33
binding site for residue MG C 108
17
AE9
SOFTWARE
A C:37 , A C:38 , G C:40 , U D:11 , C D:12
binding site for residue NCO C 109
18
AF1
SOFTWARE
C A:48 , A A:49 , U C:29
binding site for residue NCO C 110
19
AF2
SOFTWARE
G C:27 , G C:28 , U C:29 , U D:11
binding site for residue NCO C 111
20
AF3
SOFTWARE
HOH C:207 , HOH C:212 , HOH C:215 , HOH C:217 , HOH C:228 , HOH C:232
binding site for residue MG C 112
21
AF4
SOFTWARE
HOH C:209 , HOH C:218 , HOH C:229 , HOH C:231 , HOH C:233 , HOH D:210
binding site for residue MG C 113
22
AF5
SOFTWARE
HOH A:222 , HOH C:205 , HOH C:211 , HOH C:225 , HOH D:204 , HOH D:206
binding site for residue MG C 114
23
AF6
SOFTWARE
HOH A:208 , HOH B:206 , HOH C:203 , HOH C:226 , HOH D:205 , HOH D:209
binding site for residue MG C 115
24
AF7
SOFTWARE
HOH A:211 , HOH A:215 , HOH A:216 , HOH A:224 , HOH C:214 , HOH C:223
binding site for residue MG C 116
25
AF8
SOFTWARE
HOH A:219 , HOH A:230 , HOH C:208 , HOH C:216 , HOH C:221 , HOH C:224
binding site for residue MG C 117
26
AF9
SOFTWARE
HOH B:205 , A D:15
binding site for residue SM D 101
27
AG1
SOFTWARE
C D:9 , G D:10
binding site for residue NCO D 102
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
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Sorry, no Info available
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Pfam Domains
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Info
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Sorry, no Info available
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Atom Selection
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All Atoms
Protein & NOT Variant
Protein & NOT Site
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Chain C
Chain D
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (134 KB)
Header - Asym.Unit
Biol.Unit 1 (64 KB)
Header - Biol.Unit 1
Biol.Unit 2 (64 KB)
Header - Biol.Unit 2
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