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5KSB
Asym. Unit
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Asym.Unit (555 KB)
Biol.Unit 1 (276 KB)
Biol.Unit 2 (276 KB)
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(1)
Title
:
T15-DQ8.5-GLIA-GAMMA1 COMPLEX
Authors
:
J. Petersen, J. Rossjohn, H. H. Reid
Date
:
08 Jul 16 (Deposition) - 21 Sep 16 (Release) - 19 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,G,H,J (1x)
Biol. Unit 2: C,D,E,F,I (1x)
Keywords
:
Celiac Disease T Cell Receptor Peptide Mhc Complex, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. Petersen, Y. Kooy-Winkelaar, K. L. Loh, M. Tran, J. Van Bergen, F. Koning, J. Rossjohn, H. H. Reid
Diverse T Cell Receptor Gene Usage In Hla-Dq8-Associated Celiac Disease Converges Into A Consensus Binding Solution.
Structure V. 24 1643 2016
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Hetero Components
(1, 8)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
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No.
Name
Count
Type
Full Name
1
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:76 , ASN A:78
binding site for Mono-Saccharide NAG A 1003 bound to ASN A 78
2
AC2
SOFTWARE
ASN A:118 , GLU A:166 , TRP A:168 , ARG D:167
binding site for Poly-Saccharide residues NAG A 1001 through NAG A 1002 bound to ASN A 118
3
AC3
SOFTWARE
ASN B:19 , GLU B:22
binding site for Mono-Saccharide NAG B 1000 bound to ASN B 19
4
AC4
SOFTWARE
ASN C:78
binding site for Mono-Saccharide NAG C 1000 bound to ASN C 78
5
AC5
SOFTWARE
ASN C:118 , GLU C:166 , TRP C:168 , HOH C:1104
binding site for Poly-Saccharide residues NAG C 1001 through NAG C 1002 bound to ASN C 118
6
AC6
SOFTWARE
ASN D:19 , GLU D:22
binding site for Mono-Saccharide NAG D 1000 bound to ASN D 19
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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select residue range 5 to 10 in all chains
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Asym.Unit (555 KB)
Header - Asym.Unit
Biol.Unit 1 (276 KB)
Header - Biol.Unit 1
Biol.Unit 2 (276 KB)
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