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5KLV
Biol. Unit 1
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Asym.Unit (1.0 MB)
Biol.Unit 1, α-C (2.0 MB)
Biol.Unit 1 (2.0 MB)
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(1)
Title
:
STRUCTURE OF BOS TAURUS CYTOCHROME BC1 WITH FENAMIDONE INHIBITED
Authors
:
D. Xia, L. Esser, F. Zhou, Y. Zhou, Y. Xiao, W. K. Tang, C. A. Yu, Z. Qin
Date
:
25 Jun 16 (Deposition) - 12 Oct 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K (2x)
Keywords
:
Mitochondrial Respiratory Chain, Cytochrome Bc1 Complex, Fenamidone, Electron Transfer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, F. Zhou, Y. Zhou, Y. Xiao, W. K. Tang, C. A. Yu, Z. Qin, D. Xia
Hydrogen Bonding To The Substrate Is Not Required For Riesk Iron-Sulfur Protein Docking To The Quinol Oxidation Site Of Complex Iii.
J. Biol. Chem. V. 291 25019 2016
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Hetero Components
(10, 32)
Info
All Hetero Components
01a: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (6PEa)
01b: 1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPH... (6PEb)
02a: (2R)-3-{[(S)-(2-AMINOETHOXY)(HYDRO... (8PEa)
03a: CARDIOLIPIN (CDLa)
03b: CARDIOLIPIN (CDLb)
03c: CARDIOLIPIN (CDLc)
04a: CHLORIDE ION (CLa)
05a: FE2/S2 (INORGANIC) CLUSTER (FESa)
06a: (5S)-5-METHYL-2-(METHYLSULFANYL)-5... (FNMa)
07a: GLYCEROL (GOLa)
07b: GLYCEROL (GOLb)
07c: GLYCEROL (GOLc)
08a: HEME C (HECa)
09a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
09b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
10a: DI-PALMITOYL-3-SN-PHOSPHATIDYLETHA... (PEFa)
11a: 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSP... (PX4a)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6PE
4
Ligand/Ion
1,2-DIHEXANOYL-SN-GLYCERO-3-PHOSPHOETHANOLAMINE
2
8PE
2
Ligand/Ion
(2R)-3-{[(S)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-2-(TETRADECANOYLOXY)PROPYL OCTADECANOATE
3
CDL
6
Ligand/Ion
CARDIOLIPIN
4
CL
-1
Ligand/Ion
CHLORIDE ION
5
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
6
FNM
2
Ligand/Ion
(5S)-5-METHYL-2-(METHYLSULFANYL)-5-PHENYL-3-(PHENYLAMINO)-3,5-DIHYDRO-4H-IMIDAZOL-4-ONE
7
GOL
6
Ligand/Ion
GLYCEROL
8
HEC
2
Ligand/Ion
HEME C
9
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
10
PEF
2
Ligand/Ion
DI-PALMITOYL-3-SN-PHOSPHATIDYLETHANOLAMINE
11
PX4
2
Ligand/Ion
1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
SER A:439 , PHE A:442 , CDL A:502 , HIS C:221 , PX4 J:101
binding site for residue 6PE A 501
02
AC2
SOFTWARE
PHE A:336 , TRP A:443 , LEU A:444 , ARG A:445 , 6PE A:501 , ASN C:3 , ARG C:5 , THR C:225
binding site for residue CDL A 502
03
AC3
SOFTWARE
GLY A:285 , ALA B:139 , GLN B:143
binding site for residue GOL B 501
04
AC4
SOFTWARE
ALA B:165 , TYR B:168 , ARG B:169 , ARG B:245 , LEU B:430
binding site for residue GOL B 502
05
AC5
SOFTWARE
LYS B:78 , THR B:128 , PRO B:130 , HIS B:192 , VAL B:195 , GLN B:196
binding site for residue GOL B 503
06
AC6
SOFTWARE
LEU C:41 , GLN C:44 , GLY C:48 , LEU C:51 , ARG C:80 , HIS C:83 , ALA C:87 , PHE C:90 , THR C:126 , GLY C:130 , LEU C:133 , PRO C:134 , HIS C:182 , PHE C:183 , PRO C:186
binding site for residue HEM C 1001
07
AC7
SOFTWARE
TRP C:31 , GLY C:34 , LEU C:37 , HIS C:97 , VAL C:98 , ARG C:100 , SER C:106 , TRP C:113 , GLY C:116 , LEU C:119 , HIS C:196 , LEU C:200 , SER C:205 , ASN C:206
binding site for residue HEM C 1002
08
AC8
SOFTWARE
MET C:124 , PHE C:128 , TYR C:131 , VAL C:132 , MET C:138 , GLY C:142 , ALA C:143 , PRO C:270 , GLU C:271 , TYR C:273 , HOH C:1103
binding site for residue FNM C 1003
09
AC9
SOFTWARE
TRP C:30 , TYR C:95 , GLY C:99 , TYR C:103 , TYR C:104 , PHE C:276 , MET C:316 , TRP C:326 , LEU C:332 , THR C:336 , GLN F:72 , CDL G:101
binding site for residue 8PE C 1004
10
AD1
SOFTWARE
VAL D:36 , CYS D:37 , CYS D:40 , HIS D:41 , ASN D:105 , LEU D:109 , PRO D:110 , PRO D:111 , ARG D:120 , TYR D:126 , PHE D:153 , GLY D:159 , MET D:160 , PRO D:163 , ILE D:164
binding site for residue HEC D 1001
11
AD2
SOFTWARE
LEU C:46 , MET C:82 , HIS D:200 , MET D:204 , LYS D:207 , MET D:208 , MET D:211 , TYR E:49 , ASN E:53 , VAL E:54 , GLN E:57 , ASP J:36
binding site for residue PEF D 1002
12
AD3
SOFTWARE
SER C:29 , ASN C:32 , LYS C:227 , GLY C:231 , TYR D:220 , LYS D:223 , ARG D:224 , LYS D:231 , TYR G:29 , PHE G:30 , ASN G:36 , ARG G:40 , CDL G:101
binding site for residue CDL D 1003
13
AD4
SOFTWARE
CYS E:139 , HIS E:141 , LEU E:142 , CYS E:158 , HIS E:161 , SER E:163
binding site for residue FES E 1001
14
AD5
SOFTWARE
SER C:28 , SER C:29 , TRP C:30 , 8PE C:1004 , CDL D:1003 , GLN F:72 , VAL G:37 , ARG G:40 , THR G:41
binding site for residue CDL G 101
15
AD6
SOFTWARE
ASP A:417 , PHE A:442 , 6PE A:501 , ALA C:232 , TYR E:37 , THR E:40 , THR E:44 , PHE J:14 , ARG J:15 , THR J:17 , PHE J:20 , VAL J:25 , GLY K:31 , LEU K:32
binding site for residue PX4 J 101
16
AD7
SOFTWARE
TYR C:155 , ASN C:159 , THR K:36 , ARG K:39
binding site for residue 6PE K 101
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Pfam Domains
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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set fontsize 20
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wireframe 100
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