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5KLI
Biol. Unit 2
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Asym.Unit (1.7 MB)
Biol.Unit 1 (867 KB)
Biol.Unit 2 (865 KB)
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(1)
Title
:
RHODOBACTER SPHAEROIDES BC1 WITH STIGMATELLIN AND ANTIMYCIN
Authors
:
D. Xia, L. Esser, F. Zhou, W. K. Tang, C. A. Yu
Date
:
24 Jun 16 (Deposition) - 12 Oct 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B,C,E,F,G,K,L,M,O,P,Q
Biol. Unit 1: A,B,C,E,F,G (1x)
Biol. Unit 2: K,L,M,O,P,Q (1x)
Keywords
:
Mitochondrial Respiratory Chain Complex, Cytochrome Bc1, Inhibitors, Electron Transfer, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Esser, F. Zhou, Y. Zhou, Y. Xiao, W. K. Tang, C. A. Yu, Z. Qin, D. Xia
Hydrogen Bonding To The Substrate Is Not Required For Riesk Iron-Sulfur Protein Docking To The Quinol Oxidation Site Of Complex Iii.
J. Biol. Chem. V. 291 25019 2016
[
close entry info
]
Hetero Components
(6, 14)
Info
All Hetero Components
1a: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJa)
1b: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJb)
1c: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJc)
1d: (2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMIN... (ANJd)
2a: FE2/S2 (INORGANIC) CLUSTER (FESa)
2b: FE2/S2 (INORGANIC) CLUSTER (FESb)
2c: FE2/S2 (INORGANIC) CLUSTER (FESc)
2d: FE2/S2 (INORGANIC) CLUSTER (FESd)
3a: HEME C (HECa)
3b: HEME C (HECb)
3c: HEME C (HECc)
3d: HEME C (HECd)
4a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
4c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
4d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
4e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
4f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
4g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
4h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
5a: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPa)
5b: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPb)
5c: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPc)
5d: (1R)-2-{[(R)-(2-AMINOETHOXY)(HYDRO... (LOPd)
6a: STIGMATELLIN A (SMAa)
6b: STIGMATELLIN A (SMAb)
6c: STIGMATELLIN A (SMAc)
6d: STIGMATELLIN A (SMAd)
7a: STRONTIUM ION (SRa)
7b: STRONTIUM ION (SRb)
7c: STRONTIUM ION (SRc)
7d: STRONTIUM ION (SRd)
7e: STRONTIUM ION (SRe)
7f: STRONTIUM ION (SRf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ANJ
2
Ligand/Ion
(2R,3S,6S,7R,8R)-3-{[3-(FORMYLAMINO)-2-HYDROXYBENZOYL]AMINO}-8-HEXYL-2,6-DIMETHYL-4,9-DIOXO-1,5-DIOXONAN-7-YL (2S)-2-METHYLBUTANOATE
2
FES
2
Ligand/Ion
FE2/S2 (INORGANIC) CLUSTER
3
HEC
2
Ligand/Ion
HEME C
4
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
5
LOP
2
Ligand/Ion
(1R)-2-{[(R)-(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(DODECANOYLOXY)METHYL]ETHYL (9Z)-OCTADEC-9-ENOATE
6
SMA
2
Ligand/Ion
STIGMATELLIN A
7
SR
-1
Ligand/Ion
STRONTIUM ION
[
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]
Sites
(19, 19)
Info
All Sites
01: AD7 (SOFTWARE)
02: AD8 (SOFTWARE)
03: AD9 (SOFTWARE)
04: AE1 (SOFTWARE)
05: AE2 (SOFTWARE)
06: AE3 (SOFTWARE)
07: AE4 (SOFTWARE)
08: AE5 (SOFTWARE)
09: AE6 (SOFTWARE)
10: AE7 (SOFTWARE)
11: AE8 (SOFTWARE)
12: AE9 (SOFTWARE)
13: AF1 (SOFTWARE)
14: AF2 (SOFTWARE)
15: AF3 (SOFTWARE)
16: AF6 (SOFTWARE)
17: AF7 (SOFTWARE)
18: AF8 (SOFTWARE)
19: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AD7
SOFTWARE
LEU K:55 , GLN K:58 , GLY K:62 , LEU K:65 , ALA K:66 , ARG K:94 , HIS K:97 , THR K:142 , GLY K:146 , TYR K:147 , LEU K:149 , PRO K:150 , HIS K:198 , TYR K:199 , PRO K:202
binding site for residue HEM K 1001
02
AD8
SOFTWARE
TRP K:45 , GLY K:48 , LEU K:51 , ALA K:52 , PHE K:104 , HIS K:111 , ARG K:114 , SER K:120 , ARG K:125 , THR K:128 , GLY K:132 , MET K:133 , ILE K:135 , HIS K:212 , PHE K:216 , GLY K:220 , ASN K:221 , ASN K:222 , ANJ K:1004
binding site for residue HEM K 1002
03
AD9
SOFTWARE
PHE K:144 , MET K:145 , MET K:154 , GLY K:158 , VAL K:161 , ILE K:162 , PHE K:194 , LEU K:197 , PRO K:294 , GLU K:295 , PHE K:298 , TYR K:302 , MET K:336 , PHE K:337 , CYS Q:151 , HIS Q:152
binding site for residue SMA K 1003
04
AE1
SOFTWARE
LEU K:41 , TRP K:45 , VAL K:49 , ALA K:52 , VAL K:209 , ILE K:213 , PHE K:216 , ASN K:221 , PHE K:244 , PHE K:248 , ASP K:252 , HEM K:1002
binding site for residue ANJ K 1004
05
AE2
SOFTWARE
ASP E:311 , ASP K:311
binding site for residue SR K 1005
06
AE3
SOFTWARE
ASN K:42 , TYR K:109 , LEU K:110 , PHE K:113 , TYR K:117 , TYR K:118 , ARG K:358 , PHE K:367 , TRP K:368
binding site for residue LOP K 1006
07
AE4
SOFTWARE
ASP L:8 , VAL L:9 , GLU L:14 , GLU L:129
binding site for residue SR L 1002
08
AE5
SOFTWARE
CYS M:129 , HIS M:131 , LEU M:132 , CYS M:149 , CYS M:151 , HIS M:152 , SER M:154
binding site for residue FES M 1001
09
AE6
SOFTWARE
LEU O:55 , GLN O:58 , GLY O:62 , ILE O:63 , LEU O:65 , ARG O:94 , HIS O:97 , ALA O:101 , THR O:142 , GLY O:146 , TYR O:147 , LEU O:149 , PRO O:150 , HIS O:198 , TYR O:199 , PRO O:202 , TYR O:297
binding site for residue HEM O 1001
10
AE7
SOFTWARE
TRP O:45 , GLY O:48 , LEU O:51 , PHE O:104 , HIS O:111 , ARG O:114 , SER O:120 , ARG O:125 , GLY O:132 , MET O:133 , ILE O:135 , HIS O:212 , PHE O:216 , GLY O:220 , ASN O:221 , ASN O:222 , ANJ O:1004
binding site for residue HEM O 1002
11
AE8
SOFTWARE
CYS M:151 , HIS M:152 , PHE O:144 , MET O:154 , GLY O:158 , VAL O:161 , ILE O:162 , LEU O:197 , PRO O:294 , GLU O:295 , PHE O:298 , TYR O:302 , MET O:336
binding site for residue SMA O 1003
12
AE9
SOFTWARE
LEU O:41 , TRP O:45 , VAL O:49 , ALA O:52 , ILE O:213 , PHE O:216 , ASN O:221 , PHE O:244 , PHE O:248 , LYS O:251 , ASP O:252 , HEM O:1002
binding site for residue ANJ O 1004
13
AF1
SOFTWARE
LEU O:110 , TYR O:117 , TYR O:118 , VAL O:262 , ARG O:358
binding site for residue LOP O 1005
14
AF2
SOFTWARE
ASP P:8 , VAL P:9 , GLU P:14 , GLU P:129
binding site for residue SR P 1002
15
AF3
SOFTWARE
CYS Q:129 , HIS Q:131 , LEU Q:132 , CYS Q:149 , CYS Q:151 , HIS Q:152 , SER Q:154
binding site for residue FES Q 1001
16
AF6
SOFTWARE
SER A:233 , VAL L:35 , CYS L:36 , ALA L:37 , ALA L:38 , HIS L:40 , SER L:92 , ALA L:93 , LEU L:94 , ASN L:96 , ALA L:97 , PRO L:98 , MET L:103 , ARG L:107 , TYR L:130 , LEU L:135 , PHE L:160 , ILE L:183 , ALA L:184 , MET L:185
binding site for Di-peptide HEC L 1001 and CYS L 39
17
AF7
SOFTWARE
SER A:233 , VAL L:31 , TYR L:32 , VAL L:35 , ALA L:37 , ALA L:38 , CYS L:39 , HIS L:40 , LEU L:94 , ASN L:96 , PRO L:98 , MET L:103 , ARG L:107 , TYR L:130 , LEU L:135 , PHE L:160 , ILE L:183 , ALA L:184 , MET L:185
binding site for Di-peptide HEC L 1001 and CYS L 36
18
AF8
SOFTWARE
VAL P:35 , CYS P:36 , ALA P:37 , ALA P:38 , HIS P:40 , SER P:92 , ALA P:93 , LEU P:94 , ASN P:96 , ALA P:97 , PRO P:98 , MET P:103 , ARG P:107 , TYR P:130 , LEU P:135 , PHE P:160 , ILE P:183 , ALA P:184 , MET P:185
binding site for Di-peptide HEC P 1001 and CYS P 39
19
AF9
SOFTWARE
VAL P:31 , TYR P:32 , VAL P:35 , ALA P:37 , ALA P:38 , CYS P:39 , HIS P:40 , ASN P:96 , PRO P:98 , MET P:103 , ARG P:107 , TYR P:130 , LEU P:135 , PHE P:160 , ILE P:183 , ALA P:184 , MET P:185
binding site for Di-peptide HEC P 1001 and CYS P 36
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(0, 0)
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