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5KKB
Asym. Unit
Info
Asym.Unit (343 KB)
Biol.Unit 1 (169 KB)
Biol.Unit 2 (170 KB)
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(1)
Title
:
STRUCTURE OF MOUSE GOLGI ALPHA-1,2-MANNOSIDASE IA AND MAN9GLCNAC2-PA COMPLEX
Authors
:
Y. Xiang, K. W. Moremen
Date
:
21 Jun 16 (Deposition) - 07 Dec 16 (Release) - 21 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha/Alpha Barrel, Golgi Apparatus, Deglycosylation, Glycan Substrate Analog, Sugar Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Xiang, K. Karaveg, K. W. Moremen
Substrate Recognition And Catalysis By Gh47 Alpha-Mannosidases Involved In Asn-Linked Glycan Maturation In The Mammalian Secretory Pathway.
Proc. Natl. Acad. Sci. V. 113 E7890 2016 U. S. A.
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Hetero Components
(6, 25)
Info
All Hetero Components
1a: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSa)
1b: 3-PYRIDINIUM-1-YLPROPANE-1-SULFONA... (1PSb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
3a: 1,4-BUTANEDIOL (BU1a)
4a: LANTHANUM (III) ION (LAa)
4b: LANTHANUM (III) ION (LAb)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
5c: ALPHA-D-MANNOSE (MANc)
5d: ALPHA-D-MANNOSE (MANd)
5e: ALPHA-D-MANNOSE (MANe)
5f: ALPHA-D-MANNOSE (MANf)
5g: ALPHA-D-MANNOSE (MANg)
5h: ALPHA-D-MANNOSE (MANh)
5i: ALPHA-D-MANNOSE (MANi)
5j: ALPHA-D-MANNOSE (MANj)
5k: ALPHA-D-MANNOSE (MANk)
5l: ALPHA-D-MANNOSE (MANl)
5m: ALPHA-D-MANNOSE (MANm)
5n: ALPHA-D-MANNOSE (MANn)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
1PS
2
Ligand/Ion
3-PYRIDINIUM-1-YLPROPANE-1-SULFONATE
2
BMA
2
Ligand/Ion
BETA-D-MANNOSE
3
BU1
1
Ligand/Ion
1,4-BUTANEDIOL
4
LA
2
Ligand/Ion
LANTHANUM (III) ION
5
MAN
14
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:635 , MAN A:709 , HOH A:808 , HOH A:827 , HOH A:927 , HOH A:1003 , HOH A:1029
binding site for residue LA A 711
2
AC2
SOFTWARE
LEU A:315 , PRO A:316 , HIS A:319 , VAL A:370 , LYS A:374 , HOH A:803 , HOH A:845 , HOH A:901 , HOH B:1040
binding site for residue 1PS A 712
3
AC3
SOFTWARE
HOH A:1034 , VAL B:312 , LEU B:315 , PRO B:316 , HIS B:319 , HOH B:943
binding site for residue 1PS B 711
4
AC4
SOFTWARE
THR B:635 , MAN B:709 , HOH B:805 , HOH B:835 , HOH B:898 , HOH B:1015 , HOH B:1026
binding site for residue LA B 712
5
AC5
SOFTWARE
LYS B:332 , ASP B:622 , ASP B:623 , ASP B:624 , HOH B:823
binding site for residue BU1 B 713
6
AC6
SOFTWARE
ASN A:515 , LYS A:520
binding site for Mono-Saccharide NAG A 710 bound to ASN A 515
7
AC7
SOFTWARE
ASN B:515 , LYS B:520 , HOH B:802
binding site for Mono-Saccharide NAG B 710 bound to ASN B 515
8
AC8
SOFTWARE
HIS A:230 , SER A:232 , SER A:233 , LEU A:234 , PHE A:281 , ARG A:286 , TRP A:339 , TRP A:341 , ILE A:348 , ALA A:350 , GLU A:351 , GLY A:412 , LEU A:413 , ASP A:415 , LEU A:476 , ASN A:540 , ARG A:547 , PRO A:548 , GLU A:549 , PHE A:607 , GLU A:611 , THR A:635 , GLU A:636 , LA A:711 , HOH A:806 , HOH A:809 , HOH A:818 , HOH A:825 , HOH A:832 , HOH A:841 , HOH A:849 , HOH A:872 , HOH A:884 , HOH A:886 , HOH A:936 , HOH A:944 , HOH A:961 , HOH A:980 , HOH A:1024
binding site for Poly-Saccharide residues BMA A 701 through MAN A 709
9
AC9
SOFTWARE
HIS A:230 , SER A:232 , SER A:233 , LEU A:234 , PHE A:281 , ARG A:286 , TRP A:339 , TRP A:341 , ILE A:348 , ALA A:350 , GLU A:351 , GLY A:412 , LEU A:413 , ASP A:415 , LEU A:476 , ASN A:540 , ARG A:547 , PRO A:548 , GLU A:549 , PHE A:607 , GLU A:611 , THR A:635 , GLU A:636 , LA A:711 , HOH A:806 , HOH A:809 , HOH A:818 , HOH A:825 , HOH A:832 , HOH A:841 , HOH A:849 , HOH A:872 , HOH A:884 , HOH A:886 , HOH A:936 , HOH A:944 , HOH A:961 , HOH A:980 , HOH A:1024 , HIS B:230 , SER B:232 , SER B:233 , LEU B:234 , PHE B:281 , ILE B:285 , ARG B:286 , TRP B:339 , TRP B:341 , ILE B:348 , ALA B:350 , GLU B:351 , GLY B:412 , LEU B:413 , ASP B:415 , LEU B:476 , ARG B:547 , PRO B:548 , GLU B:549 , PHE B:607 , GLU B:611 , THR B:635 , GLU B:636 , LA B:712 , HOH B:811 , HOH B:814 , HOH B:818 , HOH B:843 , HOH B:860 , HOH B:862 , HOH B:869 , HOH B:874 , HOH B:897 , HOH B:915 , HOH B:917 , HOH B:931 , HOH B:941 , HOH B:951 , HOH B:970
binding site for Poly-Saccharide residues BMA B 701 through MAN B 709
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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Asym.Unit (343 KB)
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Biol.Unit 1 (169 KB)
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