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Asym. Unit
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Asym.Unit (261 KB)
Biol.Unit 1 (252 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE ADCC-POTENT ANTIBODY N60-I3 FAB IN COMPLEX WITH HIV-1 CLADE A/E GP120 W69A/S115W MUTANT AND M48U1.
Authors
:
W. D. Tolbert, M. Pazgier
Date
:
20 Jun 16 (Deposition) - 20 Jul 16 (Release) - 26 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.98
Chains
:
Asym. Unit : G,H,L,N
Biol. Unit 1: G,H,L,N (1x)
Keywords
:
Hiv-1 Gp120, Clade A/E 93Th057, Viral Protein, Viral Protein-Immune System-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Ding, W. D. Tolbert, J. Prevost, B. Pacheco, M. Coutu, O. Debbeche, S. H. Xiang, M. Pazgier, A. Finzi
A Highly Conserved Gp120 Inner Domain Residue Modulates Env Conformation And Trimer Stability.
J. Virol. V. 90 8395 2016
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Hetero Components
(6, 15)
Info
All Hetero Components
1a: D-PROLINE (DPRa)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3a: BETA-MERCAPTOPROPIONIC ACID (MPTa)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5a: AMINO GROUP (NH2a)
6a: O-(CYCLOHEXYLMETHYL)-L-TYROSINE (U2Xa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
DPR
1
Mod. Amino Acid
D-PROLINE
2
MPD
1
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
3
MPT
1
Mod. Amino Acid
BETA-MERCAPTOPROPIONIC ACID
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
NH2
1
Mod. Amino Acid
AMINO GROUP
6
U2X
1
Mod. Amino Acid
O-(CYCLOHEXYLMETHYL)-L-TYROSINE
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY H:42 , ASP L:85 , TYR L:87 , GLY L:100 , LYS L:103
binding site for residue MPD L 301
02
AC2
SOFTWARE
ASN G:234 , SER G:274 , LEU G:277
binding site for Mono-Saccharide NAG G 501 bound to ASN G 234
03
AC3
SOFTWARE
LYS G:231 , ASN G:241 , NAG G:506
binding site for Mono-Saccharide NAG G 502 bound to ASN G 241
04
AC4
SOFTWARE
ASP G:211 , LYS G:252 , ASN G:262 , ASN G:377 , VAL G:446 , SER G:447
binding site for Mono-Saccharide NAG G 503 bound to ASN G 262
05
AC5
SOFTWARE
ASN G:276 , ASN G:279
binding site for Mono-Saccharide NAG G 504 bound to ASN G 276
06
AC6
SOFTWARE
GLU G:269 , ILE G:270 , ASN G:289 , GLN G:344 , LYS G:348
binding site for Mono-Saccharide NAG G 505 bound to ASN G 289
07
AC7
SOFTWARE
ASN G:295 , ASN G:444 , NAG G:502 , HOH G:602
binding site for Mono-Saccharide NAG G 506 bound to ASN G 295
08
AC8
SOFTWARE
LYS G:231 , GLU G:268 , ASN G:334 , LYS G:337
binding site for Mono-Saccharide NAG G 507 bound to ASN G 334
09
AC9
SOFTWARE
MET G:373 , ASN G:386
binding site for Mono-Saccharide NAG G 508 bound to ASN G 386
10
AD1
SOFTWARE
GLN G:389 , ASN G:392
binding site for Mono-Saccharide NAG G 509 bound to ASN G 392
11
AD2
SOFTWARE
ASN G:461
binding site for Mono-Saccharide NAG G 510 bound to ASN G 461
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (261 KB)
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