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5K9Q
Asym. Unit
Info
Asym.Unit (1.9 MB)
Biol.Unit 1 (946 KB)
Biol.Unit 2 (941 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MULTIDONOR HV1-18-CLASS BROADLY NEUTRALIZING INFLUENZA A ANTIBODY 16.A.26 IN COMPLEX WITH A/HONG KONG/1-4-MA21-1/1968 (H3N2) HEMAGGLUTININ
Authors
:
M. G. Joyce, P. V. Thomas, A. K. Wheatley, A. B. Mcdermott, J. R. Mascola,
Date
:
01 Jun 16 (Deposition) - 30 Nov 16 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Biol. Unit 2: M,N,O,P,Q,R,S,T,U,V,X,Y (1x)
Keywords
:
Hv1-18 (Qxxv), Multidonor, H5, Universal Influenza Vaccine, Immune System
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. G. Joyce, A. K. Wheatley, P. V. Thomas, G. Y. Chuang, C. Soto, R. T. Bailer, A. Druz, I. S. Georgiev, R. A. Gillespie, M. Kanekiyo, W. P. Kong, K. Leung, S. N. Narpala, M. S. Prabhakaran, E. S. Yang, B. Zhang, Y. Zhang, M. Asokan, J. C. Boyington, T. Bylund, S. Darko, C. R. Lees, A. Ransier, C. H. Shen, L. Wang, J. R. Whittle, X. Wu, H. M. Yassine, C. Santos, Y. Matsuoka, Y. Tsybovsky, U. Baxa, J. C. Mullikin, K. Subbarao, D. C. Douek, B. S. Graham, R. A. Koup, J. E. Ledgerwood, M. Roederer, L. Shapiro, P. D. Kwong, J. R. Mascola, A. B. Mcdermott
Vaccine-Induced Antibodies That Neutralize Group 1 And Grou 2 Influenza A Viruses.
Cell(Cambridge, Mass. ) V. 166 609 2016
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Hetero Components
(1, 36)
Info
All Hetero Components
1a: N-ACETYL-D-GLUCOSAMINE (NAGa)
1aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
1ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
1ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
1ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
1ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
1af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
1ag: N-ACETYL-D-GLUCOSAMINE (NAGag)
1ah: N-ACETYL-D-GLUCOSAMINE (NAGah)
1ai: N-ACETYL-D-GLUCOSAMINE (NAGai)
1aj: N-ACETYL-D-GLUCOSAMINE (NAGaj)
1b: N-ACETYL-D-GLUCOSAMINE (NAGb)
1c: N-ACETYL-D-GLUCOSAMINE (NAGc)
1d: N-ACETYL-D-GLUCOSAMINE (NAGd)
1e: N-ACETYL-D-GLUCOSAMINE (NAGe)
1f: N-ACETYL-D-GLUCOSAMINE (NAGf)
1g: N-ACETYL-D-GLUCOSAMINE (NAGg)
1h: N-ACETYL-D-GLUCOSAMINE (NAGh)
1i: N-ACETYL-D-GLUCOSAMINE (NAGi)
1j: N-ACETYL-D-GLUCOSAMINE (NAGj)
1k: N-ACETYL-D-GLUCOSAMINE (NAGk)
1l: N-ACETYL-D-GLUCOSAMINE (NAGl)
1m: N-ACETYL-D-GLUCOSAMINE (NAGm)
1n: N-ACETYL-D-GLUCOSAMINE (NAGn)
1o: N-ACETYL-D-GLUCOSAMINE (NAGo)
1p: N-ACETYL-D-GLUCOSAMINE (NAGp)
1q: N-ACETYL-D-GLUCOSAMINE (NAGq)
1r: N-ACETYL-D-GLUCOSAMINE (NAGr)
1s: N-ACETYL-D-GLUCOSAMINE (NAGs)
1t: N-ACETYL-D-GLUCOSAMINE (NAGt)
1u: N-ACETYL-D-GLUCOSAMINE (NAGu)
1v: N-ACETYL-D-GLUCOSAMINE (NAGv)
1w: N-ACETYL-D-GLUCOSAMINE (NAGw)
1x: N-ACETYL-D-GLUCOSAMINE (NAGx)
1y: N-ACETYL-D-GLUCOSAMINE (NAGy)
1z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
NAG
36
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(36, 36)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
35: AF8 (SOFTWARE)
36: AF9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:22 , ASN X:219
binding site for Mono-Saccharide NAG A 401 bound to ASN A 22
02
AC2
SOFTWARE
ASN A:38 , THR A:318 , HOH A:521 , HOH A:578
binding site for Mono-Saccharide NAG A 402 bound to ASN A 38
03
AC3
SOFTWARE
GLN A:80 , ASN A:81 , GLU A:119 , PHE A:120 , HOH A:603
binding site for Mono-Saccharide NAG A 403 bound to ASN A 81
04
AC4
SOFTWARE
ASN A:165 , HOH A:509 , HOH A:534 , MET Q:168
binding site for Mono-Saccharide NAG A 404 bound to ASN A 165
05
AC5
SOFTWARE
ASN A:285 , VAL A:297 , HOH A:506 , HOH A:564 , HOH B:313
binding site for Mono-Saccharide NAG A 405 bound to ASN A 285
06
AC6
SOFTWARE
ALA B:147 , GLU B:150 , ASN B:154 , THR B:156
binding site for Mono-Saccharide NAG B 201 bound to ASN B 154
07
AC7
SOFTWARE
PRO C:21 , ASN C:22
binding site for Mono-Saccharide NAG C 401 bound to ASN C 22
08
AC8
SOFTWARE
ASN C:38 , THR C:40 , THR C:318 , HOH C:543 , HOH C:546 , HOH C:578 , VAL G:105
binding site for Mono-Saccharide NAG C 402 bound to ASN C 38
09
AC9
SOFTWARE
ASN C:81 , PHE C:120 , ARG C:150 , GLU Y:143
binding site for Mono-Saccharide NAG C 403 bound to ASN C 81
10
AD1
SOFTWARE
ASN C:165 , THR C:167 , HOH C:504 , TRP E:222
binding site for Mono-Saccharide NAG C 404 bound to ASN C 165
11
AD2
SOFTWARE
SER C:45 , ASN C:285 , VAL C:297 , HOH C:522 , HOH C:596
binding site for Mono-Saccharide NAG C 405 bound to ASN C 285
12
AD3
SOFTWARE
ALA D:147 , GLU D:150 , ASN D:154
binding site for Mono-Saccharide NAG D 201 bound to ASN D 154
13
AD4
SOFTWARE
ASN E:22
binding site for Mono-Saccharide NAG E 401 bound to ASN E 22
14
AD5
SOFTWARE
ASN E:38 , THR E:318 , HOH E:536 , HOH E:540 , HOH E:575
binding site for Mono-Saccharide NAG E 402 bound to ASN E 38
15
AD6
SOFTWARE
GLN E:80 , ASN E:81 , GLU E:119 , PHE E:120 , HOH E:525
binding site for Mono-Saccharide NAG E 403 bound to ASN E 81
16
AD7
SOFTWARE
ASN E:165 , THR E:167 , HOH E:517
binding site for Mono-Saccharide NAG E 404 bound to ASN E 165
17
AD8
SOFTWARE
SER E:45 , ASN E:285 , VAL E:297 , HOH E:504 , HOH E:558 , HOH F:331
binding site for Mono-Saccharide NAG E 405 bound to ASN E 285
18
AD9
SOFTWARE
ALA F:147 , GLU F:150 , ASN F:154 , THR F:156 , HOH F:319
binding site for Mono-Saccharide NAG F 201 bound to ASN F 154
19
AE1
SOFTWARE
PRO M:21 , ASN M:22
binding site for Mono-Saccharide NAG M 401 bound to ASN M 22
20
AE2
SOFTWARE
ASN M:38 , THR M:318 , VAL S:105
binding site for Mono-Saccharide NAG M 402 bound to ASN M 38
21
AE3
SOFTWARE
GLU L:143 , ASN M:81 , GLU M:119 , HOH M:505
binding site for Mono-Saccharide NAG M 403 bound to ASN M 81
22
AE4
SOFTWARE
ASN M:165 , THR M:167 , HOH M:512
binding site for Mono-Saccharide NAG M 404 bound to ASN M 165
23
AE5
SOFTWARE
SER M:45 , ASN M:285 , VAL M:297 , HOH M:515 , HOH M:539
binding site for Mono-Saccharide NAG M 405 bound to ASN M 285
24
AE6
SOFTWARE
ALA N:147 , GLU N:150 , ASN N:154 , THR N:156
binding site for Mono-Saccharide NAG N 201 bound to ASN N 154
25
AE7
SOFTWARE
ASN O:22
binding site for Mono-Saccharide NAG O 401 bound to ASN O 22
26
AE8
SOFTWARE
ASN O:38 , THR O:318 , HOH O:518 , VAL U:105 , HOH U:330
binding site for Mono-Saccharide NAG O 402 bound to ASN O 38
27
AE9
SOFTWARE
GLN O:80 , ASN O:81 , GLU O:119 , PHE O:120 , HOH O:564
binding site for Mono-Saccharide NAG O 403 bound to ASN O 81
28
AF1
SOFTWARE
ASN O:165 , THR O:167 , HOH O:502
binding site for Mono-Saccharide NAG O 404 bound to ASN O 165
29
AF2
SOFTWARE
SER O:45 , ASN O:285 , VAL O:297 , HOH O:501 , HOH O:511
binding site for Mono-Saccharide NAG O 405 bound to ASN O 285
30
AF3
SOFTWARE
ALA P:147 , GLU P:150 , ASN P:154 , THR P:156
binding site for Mono-Saccharide NAG P 201 bound to ASN P 154
31
AF4
SOFTWARE
ASN H:214 , LYS H:216 , LYS H:221 , ASN Q:22
binding site for Mono-Saccharide NAG Q 401 bound to ASN Q 22
32
AF5
SOFTWARE
ASN Q:38 , THR Q:318 , HOH Q:522 , HOH Q:529 , VAL X:105
binding site for Mono-Saccharide NAG Q 402 bound to ASN Q 38
33
AF6
SOFTWARE
GLN Q:80 , ASN Q:81 , GLU Q:119 , PHE Q:120 , HOH Q:553
binding site for Mono-Saccharide NAG Q 403 bound to ASN Q 81
34
AF7
SOFTWARE
TRP M:222 , ASN Q:165 , THR Q:167 , HOH Q:592
binding site for Mono-Saccharide NAG Q 404 bound to ASN Q 165
35
AF8
SOFTWARE
SER Q:45 , ASN Q:285 , VAL Q:297 , HOH Q:508 , HOH Q:562
binding site for Mono-Saccharide NAG Q 405 bound to ASN Q 285
36
AF9
SOFTWARE
ALA R:147 , GLU R:150 , ASN R:154 , THR R:156
binding site for Mono-Saccharide NAG R 201 bound to ASN R 154
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (1.9 MB)
Header - Asym.Unit
Biol.Unit 1 (946 KB)
Header - Biol.Unit 1
Biol.Unit 2 (941 KB)
Header - Biol.Unit 2
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