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5K9G
Biol. Unit 1
Info
Asym.Unit (97 KB)
Biol.Unit 1 (180 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF GTP CYCLOHYDROLASE-IB WITH TRIS
Authors
:
J. Alvarez, B. Stec, M. A. Swairjo
Date
:
31 May 16 (Deposition) - 07 Sep 16 (Release) - 07 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (2x)
Keywords
:
Hydrolase, Biosynthetic Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Sankaran, S. A. Bonnett, K. Shah, S. Gabriel, R. Reddy, P. Schimmel, D. A. Rodionov, V. De Crecy-Lagard, J. D. Helmann, D. Iwata-Reuyl, M. A. Swairjo
Zinc-Independent Folate Biosynthesis: Genetic, Biochemical, And Structural Investigations Reveal New Metal Dependence For Gtp Cyclohydrolase Ib.
J. Bacteriol. V. 191 6936 2009
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
2a: FORMIC ACID (FMTa)
3a: S-NITROSO-CYSTEINE (SNCa)
3b: S-NITROSO-CYSTEINE (SNCb)
4a: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,... (TRSa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
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No.
Name
Count
Type
Full Name
1
EDO
16
Ligand/Ion
1,2-ETHANEDIOL
2
FMT
2
Ligand/Ion
FORMIC ACID
3
SNC
4
Mod. Amino Acid
S-NITROSO-CYSTEINE
4
TRS
2
Ligand/Ion
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:147 , HIS A:159 , GLU A:201 , HOH A:474 , HOH A:530
binding site for residue ZN A 301
02
AC2
SOFTWARE
PHE A:76 , HIS A:135 , SER A:136 , LEU A:169 , SER A:171 , GLU A:174 , VAL A:175
binding site for residue EDO A 302
03
AC3
SOFTWARE
PHE A:76 , HIS A:80
binding site for residue EDO A 303
04
AC4
SOFTWARE
CYS B:147 , HIS B:159 , GLU B:201 , TRS B:302
binding site for residue ZN B 301
05
AC5
SOFTWARE
MET A:60 , CYS B:147 , HIS B:159 , GLU B:201 , GLU B:243 , HIS B:246 , ZN B:301 , HOH B:405 , HOH B:433 , HOH B:535
binding site for residue TRS B 302
06
AC6
SOFTWARE
PHE B:76 , HIS B:135 , SER B:136 , MET B:137 , LEU B:169 , SER B:171 , VAL B:175
binding site for residue EDO B 303
07
AC7
SOFTWARE
SER B:168 , LEU B:169 , THR B:170 , SER B:234 , PHE B:235 , HOH B:541 , HOH B:589
binding site for residue EDO B 304
08
AC8
SOFTWARE
LYS B:107 , THR B:108 , GLN B:191 , TYR B:193 , HOH B:517
binding site for residue EDO B 305
09
AC9
SOFTWARE
THR B:125 , GLU B:127 , GLY B:134 , SER B:136 , THR B:170
binding site for residue EDO B 306
10
AD1
SOFTWARE
LYS B:151 , TYR B:156 , TYR B:209
binding site for residue EDO B 307
11
AD2
SOFTWARE
LYS B:33 , THR B:34 , PHE B:76 , GLY B:176 , ILE B:177 , HOH B:417 , HOH B:459
binding site for residue EDO B 308
12
AD3
SOFTWARE
CYS B:147 , HIS B:159 , GLN B:161 , ASN B:241 , GLU B:243
binding site for residue FMT B 309
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0 ; only for superseded entry 3D1T: 1,2)
Info
all CATH domains
1a: CATH_3d1tA00 ()
1b: CATH_3d1tB00 ()
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Pfam Domains
(0, 0)
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Asym.Unit (97 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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