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5K90
Biol. Unit 1
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Asym.Unit (408 KB)
Biol.Unit 1 (399 KB)
Biol.Unit 2 (301 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF DIMERIC CHLORITE DISMUTASE FROM CYANOTHECE SP. PCC7425 IN COMPLEX WITH ISOTHIOCYANATE
Authors
:
D. Puehringer, I. Schaffner, G. Mlynek, C. Obinger, K. Djinovic-Carug
Date
:
31 May 16 (Deposition) - 21 Jun 17 (Release) - 21 Jun 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.28
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: B,C,D (1x)
Keywords
:
Chlorite Dismutase, Cyanobacteria, Heme, Ferredoxin-Like Fold, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. Schaffner, G. Mlynek, N. Flego, D. Puehringer, J. Libiseller-Egger, L. Coates, S. Hofbauer, M. Bellei, P. G. Furtmueller, G. Battistuzzi, G. Smulevich, K. Djinovic-Carugo C. Obinger
Crystal Structure Of Dimeric Chlorite Dismutase From Cyanothece Sp. Pcc7425 In Complex With Isothiocyanate
To Be Published
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Hetero Components
(4, 19)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
1d: GLYCEROL (GOLd)
1e: GLYCEROL (GOLe)
1f: GLYCEROL (GOLf)
1g: GLYCEROL (GOLg)
1h: GLYCEROL (GOLh)
1i: GLYCEROL (GOLi)
2a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
2b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
2c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
2d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3a: ISOTHIOCYANATE (IS8a)
3b: ISOTHIOCYANATE (IS8b)
3c: ISOTHIOCYANATE (IS8c)
3d: ISOTHIOCYANATE (IS8d)
4a: MAGNESIUM ION (MGa)
5a: SULFATE ION (SO4a)
5b: SULFATE ION (SO4b)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
9
Ligand/Ion
GLYCEROL
2
HEM
4
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
3
IS8
4
Ligand/Ion
ISOTHIOCYANATE
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
SO4
2
Ligand/Ion
SULFATE ION
[
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:128 , LEU A:129 , PHE A:145 , HEM A:502
binding site for residue IS8 A 501
02
AC2
SOFTWARE
ILE A:59 , ARG A:60 , TYR A:61 , ALA A:62 , LEU A:70 , ILE A:90 , LYS A:92 , TRP A:96 , PHE A:108 , HIS A:114 , THR A:115 , GLY A:118 , VAL A:125 , ARG A:127 , PHE A:141 , PHE A:145 , LEU A:158 , LEU A:159 , MET A:162 , TRP A:168 , IS8 A:501 , HOH A:623 , HOH A:638 , HOH A:639 , HOH A:679
binding site for residue HEM A 502
03
AC3
SOFTWARE
ILE A:36 , ARG A:128 , TRP A:144 , HOH A:607 , HOH A:643 , HOH A:707
binding site for residue GOL A 503
04
AC4
SOFTWARE
ARG A:4 , HOH A:669 , ARG B:4
binding site for residue SO4 A 504
05
AC5
SOFTWARE
ILE B:59 , ARG B:60 , TYR B:61 , ALA B:62 , LEU B:70 , ILE B:90 , LYS B:92 , PHE B:108 , HIS B:114 , THR B:115 , GLY B:118 , ARG B:127 , PHE B:141 , PHE B:145 , LEU B:158 , MET B:162 , TRP B:168 , IS8 B:202 , HOH B:330 , HOH B:370 , HOH B:390 , HOH B:399
binding site for residue HEM B 201
06
AC6
SOFTWARE
ARG B:128 , LEU B:129 , PHE B:145 , HEM B:201 , HOH B:361
binding site for residue IS8 B 202
07
AC7
SOFTWARE
ILE B:36 , ARG B:128 , TRP B:144 , HOH B:345 , HOH B:392
binding site for residue GOL B 203
08
AC8
SOFTWARE
ARG A:133 , ALA B:56 , SER B:57 , ASN B:58 , HOH B:304
binding site for residue GOL B 204
09
AC9
SOFTWARE
ALA A:56 , SER A:57 , ASN A:58 , TRP B:97 , ARG B:133 , HOH B:320
binding site for residue GOL B 205
10
AD1
SOFTWARE
ARG C:128 , LEU C:129 , PHE C:145 , HEM C:502
binding site for residue IS8 C 501
11
AD2
SOFTWARE
ILE C:59 , ARG C:60 , TYR C:61 , ALA C:62 , LEU C:70 , ILE C:90 , LYS C:92 , PHE C:108 , HIS C:114 , THR C:115 , GLY C:118 , ARG C:127 , PHE C:141 , PHE C:145 , LEU C:158 , MET C:162 , TRP C:168 , IS8 C:501 , HOH C:618 , HOH C:635 , HOH C:646 , HOH C:716
binding site for residue HEM C 502
12
AD3
SOFTWARE
ALA C:56 , SER C:57 , ASN C:58 , HOH C:611 , HOH C:630 , TRP D:97 , ARG D:133
binding site for residue GOL C 503
13
AD4
SOFTWARE
GLY C:136 , GLU C:137 , GLU C:138
binding site for residue GOL C 504
14
AD5
SOFTWARE
ARG C:133 , HOH C:727 , ALA D:56 , SER D:57 , ASN D:58 , HOH D:374
binding site for residue GOL C 505
15
AD6
SOFTWARE
TRP C:15 , ILE C:36 , ARG C:128 , TRP C:144 , HOH C:602 , HOH C:746
binding site for residue GOL C 506
16
AD7
SOFTWARE
ARG C:4 , HOH C:603 , ARG D:4
binding site for residue SO4 C 507
17
AD8
SOFTWARE
HOH B:333 , HOH B:405 , HOH B:513 , HOH C:745
binding site for residue MG C 508
18
AD9
SOFTWARE
ILE D:59 , ARG D:60 , TYR D:61 , ALA D:62 , LEU D:70 , ILE D:90 , LYS D:92 , TRP D:96 , PHE D:108 , HIS D:114 , THR D:115 , GLY D:118 , ARG D:127 , PHE D:141 , THR D:143 , PHE D:145 , LEU D:158 , LEU D:159 , MET D:162 , TRP D:168 , IS8 D:202 , HOH D:312 , HOH D:319 , HOH D:360 , HOH D:362
binding site for residue HEM D 201
19
AE1
SOFTWARE
ARG D:128 , LEU D:129 , PHE D:145 , HEM D:201
binding site for residue IS8 D 202
20
AE2
SOFTWARE
ARG D:128 , TRP D:144 , HOH D:308 , HOH D:331
binding site for residue GOL D 203
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (408 KB)
Header - Asym.Unit
Biol.Unit 1 (399 KB)
Header - Biol.Unit 1
Biol.Unit 2 (301 KB)
Header - Biol.Unit 2
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