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5K8F
Biol. Unit 1
Info
Asym.Unit (657 KB)
Biol.Unit 1 (223 KB)
Biol.Unit 2 (218 KB)
Biol.Unit 3 (219 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ACETYL-COA SYNTHETASE IN COMPLEX WITH ATP AND ACETYL-AMP FROM CRYPTOCOCCUS NEOFORMANS H99
Authors
:
Seattle Structural Genomics Center For Infectious Disease (S D. Fox Iii, S. L. Delker, K. T. Potts, D. D. Lorimer, T. E. Edwards, M. W. Ssgcid
Date
:
30 May 16 (Deposition) - 13 Jul 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Keywords
:
Ssgcid, Nih, Niaid, Synthetase, Acs1, Acetyl-Amp, Atp, Adenosine Triphosphate, Acetyl Adenylate, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Seattle Structural Genomics Center For Infectious Disease (Ssgcid), Ssgcid, D. Fox Iii, S. L. Delker, K. T. Potts, M. M. Numa, T. E. Edwards, D. D. Lorimer, M. W. Mutz, D. J. Krysan
Crystal Structure Of Acetyl-Coa Synthetase In Complex With Atp And Acetyl-Amp From Cryptococcus Neoformans H99
To Be Published
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-A... (6R9a)
1b: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-A... (6R9b)
1c: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-A... (6R9c)
2a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
2b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
2c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
5a: PHOSPHATE ION (PO4a)
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Label:
No.
Name
Count
Type
Full Name
1
6R9
1
Ligand/Ion
[[(2~{R},3~{S},4~{R},5~{R})-5-(6-AMINOPURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-OXIDANYL-PHOSPHORYL]ETHANOATE
2
ATP
1
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
MG
-1
Ligand/Ion
MAGNESIUM ION
5
PO4
-1
Ligand/Ion
PHOSPHATE ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AD5 (SOFTWARE)
10: AE2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:442 , MG A:702 , ATP A:703 , 6R9 A:704 , HOH A:802
binding site for residue MG A 701
02
AC2
SOFTWARE
ARG A:542 , MG A:701 , ATP A:703 , HOH A:802
binding site for residue MG A 702
03
AC3
SOFTWARE
THR A:289 , SER A:290 , SER A:292 , THR A:293 , LYS A:297 , TRP A:334 , GLY A:412 , GLU A:413 , PRO A:414 , ASP A:436 , THR A:437 , TYR A:438 , TRP A:439 , MET A:440 , THR A:441 , ASP A:527 , ILE A:539 , ARG A:542 , LYS A:640 , MG A:701 , MG A:702 , 6R9 A:704 , EDO A:708 , HOH A:802
binding site for residue ATP A 703
04
AC4
SOFTWARE
TRP A:334 , VAL A:411 , GLY A:412 , GLU A:413 , PRO A:414 , ASP A:436 , THR A:437 , TYR A:438 , TRP A:439 , MET A:440 , THR A:441 , ASP A:527 , ILE A:539 , ARG A:542 , LYS A:640 , MG A:701 , ATP A:703 , EDO A:708
binding site for residue 6R9 A 704
05
AC5
SOFTWARE
ALA A:320 , HIS A:321 , PRO A:322 , ASN A:348
binding site for residue EDO A 705
06
AC6
SOFTWARE
THR A:74 , ARG A:111 , HIS A:112 , ALA A:347 , HOH A:948
binding site for residue EDO A 706
07
AC7
SOFTWARE
ASP A:76 , TRP A:77 , TYR A:78
binding site for residue EDO A 707
08
AC8
SOFTWARE
PRO A:414 , GLY A:541 , ARG A:542 , ASP A:545 , THR A:556 , ARG A:643 , ATP A:703 , 6R9 A:704
binding site for residue EDO A 708
09
AD5
SOFTWARE
ALA A:86 , GLY A:87 , TYR B:113 , PRO B:117
binding site for residue EDO B 706
10
AE2
SOFTWARE
GLU A:138 , GLU C:90 , HIS C:91 , HOH C:813
binding site for residue MG C 705
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SAPs(SNPs)/Variants
(0, 0)
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Exons
(0, 0)
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (657 KB)
Header - Asym.Unit
Biol.Unit 1 (223 KB)
Header - Biol.Unit 1
Biol.Unit 2 (218 KB)
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Biol.Unit 3 (219 KB)
Header - Biol.Unit 3
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