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5K73
Asym. Unit
Info
Asym.Unit (619 KB)
Biol.Unit 1 (127 KB)
Biol.Unit 2 (128 KB)
Biol.Unit 3 (127 KB)
Biol.Unit 4 (128 KB)
Biol.Unit 5 (128 KB)
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(1)
Title
:
AS-ISOLATED DBR1 WITH FE(II) AND ZN(II)
Authors
:
N. E. Clark, A. B. Taylor, P. J. Hart
Date
:
25 May 16 (Deposition) - 07 Dec 16 (Release) - 07 Dec 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.08
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Keywords
:
Metalloenzyme, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. E. Clark, A. Katolik, K. Roberts, A. B. Taylor, S. P. Holloway, J. P. Schuermann, E. J. Montemayor, S. W. Stevens, P. F. Fitzpatrick, M. J. Damha, P. J. Hart
The Rna Lariat Debranching Enzyme Dbr1: Metal Dependence An Branched Rna Co-Crystal Structures
Proc. Natl. Acad. Sci. Usa 2016
[
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Hetero Components
(4, 29)
Info
All Hetero Components
1a: FE (II) ION (FE2a)
1b: FE (II) ION (FE2b)
1c: FE (II) ION (FE2c)
1d: FE (II) ION (FE2d)
1e: FE (II) ION (FE2e)
2a: HYDROXIDE ION (OHa)
2b: HYDROXIDE ION (OHb)
2c: HYDROXIDE ION (OHc)
2d: HYDROXIDE ION (OHd)
2e: HYDROXIDE ION (OHe)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FE2
5
Ligand/Ion
FE (II) ION
2
OH
5
Ligand/Ion
HYDROXIDE ION
3
SO4
14
Ligand/Ion
SULFATE ION
4
ZN
5
Ligand/Ion
ZINC ION
[
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Sites
(29, 29)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:45 , ASN A:90 , HIS A:180 , HIS A:230 , ZN A:402 , OH A:406
binding site for residue FE2 A 401
02
AC2
SOFTWARE
CYS A:14 , HIS A:16 , ASP A:45 , HIS A:232 , FE2 A:401 , OH A:406
binding site for residue ZN A 402
03
AC3
SOFTWARE
ARG A:50 , ASN A:95 , HIS A:99 , PRO A:146 , HOH A:538
binding site for residue SO4 A 403
04
AC4
SOFTWARE
GLN A:173 , LYS A:224 , HOH A:502
binding site for residue SO4 A 404
05
AC5
SOFTWARE
GLN A:163 , SER A:298 , ILE A:299 , SER A:300
binding site for residue SO4 A 405
06
AC6
SOFTWARE
HIS A:16 , ASP A:45 , HIS A:230 , HIS A:232 , FE2 A:401 , ZN A:402 , HOH A:501
binding site for residue OH A 406
07
AC7
SOFTWARE
ASP B:45 , ASN B:90 , HIS B:180 , HIS B:230 , ZN B:402 , OH B:406
binding site for residue FE2 B 401
08
AC8
SOFTWARE
CYS B:14 , HIS B:16 , ASP B:45 , HIS B:232 , FE2 B:401 , OH B:406
binding site for residue ZN B 402
09
AC9
SOFTWARE
ARG B:50 , ASN B:95 , HIS B:99 , PRO B:146 , HOH B:517 , HOH B:590
binding site for residue SO4 B 403
10
AD1
SOFTWARE
LYS B:59 , LYS B:134 , HIS B:156
binding site for residue SO4 B 404
11
AD2
SOFTWARE
THR B:307 , LYS B:308 , GLN C:184 , LYS C:215
binding site for residue SO4 B 405
12
AD3
SOFTWARE
HIS B:16 , ASP B:45 , HIS B:230 , HIS B:232 , FE2 B:401 , ZN B:402 , HOH B:501
binding site for residue OH B 406
13
AD4
SOFTWARE
GLN B:184 , LYS B:215 , THR C:307 , LYS C:308 , HOH C:544
binding site for residue SO4 C 401
14
AD5
SOFTWARE
ASP C:45 , ASN C:90 , HIS C:180 , HIS C:230 , ZN C:403 , OH C:406
binding site for residue FE2 C 402
15
AD6
SOFTWARE
CYS C:14 , HIS C:16 , ASP C:45 , HIS C:232 , FE2 C:402 , OH C:406
binding site for residue ZN C 403
16
AD7
SOFTWARE
ARG C:50 , ASN C:95 , HIS C:99 , HOH C:504 , HOH C:516
binding site for residue SO4 C 404
17
AD8
SOFTWARE
LYS C:320 , TYR C:321 , HOH C:564 , TYR D:51 , TYR D:74 , THR D:332
binding site for residue SO4 C 405
18
AD9
SOFTWARE
HIS C:16 , ASP C:45 , HIS C:230 , HIS C:232 , FE2 C:402 , ZN C:403 , HOH C:501
binding site for residue OH C 406
19
AE1
SOFTWARE
ASP D:45 , ASN D:90 , HIS D:180 , HIS D:230 , ZN D:402 , OH D:407
binding site for residue FE2 D 401
20
AE2
SOFTWARE
CYS D:14 , HIS D:16 , ASP D:45 , HIS D:232 , FE2 D:401 , OH D:407
binding site for residue ZN D 402
21
AE3
SOFTWARE
ARG D:50 , ASN D:95 , HIS D:99 , PRO D:146 , HOH D:512 , HOH D:540 , HOH D:573 , HOH D:578
binding site for residue SO4 D 403
22
AE4
SOFTWARE
GLN D:163 , SER D:298 , ILE D:299 , SER D:300 , HOH D:580
binding site for residue SO4 D 404
23
AE5
SOFTWARE
ILE D:132 , PHE D:155 , HIS D:156
binding site for residue SO4 D 405
24
AE6
SOFTWARE
SER D:172 , GLN D:173
binding site for residue SO4 D 406
25
AE7
SOFTWARE
HIS D:16 , ASP D:45 , HIS D:230 , HIS D:232 , FE2 D:401 , ZN D:402 , HOH D:501
binding site for residue OH D 407
26
AE8
SOFTWARE
ASP E:45 , ASN E:90 , HIS E:180 , HIS E:230 , ZN E:402 , OH E:404
binding site for residue FE2 E 401
27
AE9
SOFTWARE
CYS E:14 , HIS E:16 , ASP E:45 , HIS E:232 , FE2 E:401 , OH E:404
binding site for residue ZN E 402
28
AF1
SOFTWARE
ARG E:50 , ASN E:95 , HIS E:99 , PRO E:146 , HOH E:517 , HOH E:572
binding site for residue SO4 E 403
29
AF2
SOFTWARE
HIS E:16 , ASP E:45 , HIS E:230 , HIS E:232 , FE2 E:401 , ZN E:402 , HOH E:501
binding site for residue OH E 404
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asym.Unit (619 KB)
Header - Asym.Unit
Biol.Unit 1 (127 KB)
Header - Biol.Unit 1
Biol.Unit 2 (128 KB)
Header - Biol.Unit 2
Biol.Unit 3 (127 KB)
Header - Biol.Unit 3
Biol.Unit 4 (128 KB)
Header - Biol.Unit 4
Biol.Unit 5 (128 KB)
Header - Biol.Unit 5
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