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5K5E
Asym. Unit
Info
Asym.Unit (380 KB)
Biol.Unit 1 (371 KB)
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(1)
Title
:
DISCOVERY AND STRUCTURE-ACTIVITY RELATIONSHIPS OF A HIGHLY SELECTIVE BUTYRYLCHOLINESTERASE INHIBITOR BY STRUCTURE-BASED VIRTUAL SCREENING
Authors
:
E. De La Mora, S. N. Dighe, G. S. Deora, B. P. Ross, F. Nachon, X. Brazzol
Date
:
23 May 16 (Deposition) - 27 Jul 16 (Release) - 28 Sep 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
High Selective Inhibitor, Butyrylcholinesterase, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. N. Dighe, G. S. Deora, E. De La Mora, F. Nachon, S. Chan, M. O. Parat, X. Brazzolotto, B. P. Ross
Discovery And Structure-Activity Relationships Of A Highly Selective Butyrylcholinesterase Inhibitor By Structure-Base Virtual Screening.
J. Med. Chem. V. 59 7683 2016
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: [(2~{R})-OXOLAN-2-YL]METHYL 4-(9-E... (6QSa)
1b: [(2~{R})-OXOLAN-2-YL]METHYL 4-(9-E... (6QSb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6QS
2
Ligand/Ion
[(2~{R})-OXOLAN-2-YL]METHYL 4-(9-ETHYLCARBAZOL-3-YL)-2-METHYL-5-OXIDANYLIDENE-4,6,7,8-TETRAHYDRO-1~{H}-QUINOLINE-3-CARBOXYLATE
2
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
NAG
16
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:14 , ASN A:57
binding site for residue NAG A 602
02
AC2
SOFTWARE
TRP A:82 , GLY A:115 , GLY A:116 , GLY A:117 , GLU A:197 , SER A:198 , PRO A:285 , SER A:287 , ALA A:328 , PHE A:398 , HIS A:438 , HOH A:701 , HOH A:731 , HOH A:749
binding site for residue 6QS A 609
03
AC3
SOFTWARE
TYR A:396 , PRO A:401
binding site for residue EDO A 610
04
AC4
SOFTWARE
ARG B:14 , ASN B:57
binding site for residue NAG B 602
05
AC5
SOFTWARE
TRP B:82 , GLY B:115 , GLY B:116 , GLY B:117 , GLU B:197 , SER B:198 , PRO B:285 , SER B:287 , ALA B:328 , PHE B:329 , TYR B:332 , HIS B:438
binding site for residue 6QS B 609
06
AC6
SOFTWARE
HIS B:77 , GLU B:443
binding site for residue EDO B 610
07
AC7
SOFTWARE
ASN B:245 , PHE B:278
binding site for residue EDO B 611
08
AC8
SOFTWARE
TYR B:61 , TRP B:98 , ASP B:129 , LYS B:131
binding site for residue GOL B 612
09
AC9
SOFTWARE
GLU A:411 , TRP A:412 , LYS B:248 , GLY B:251 , SER B:253
binding site for residue GOL B 613
10
AD1
SOFTWARE
ILE A:4 , ASN A:17 , THR A:24
binding site for Mono-Saccharide NAG A 601 bound to ASN A 17
11
AD2
SOFTWARE
ASN A:106 , ASN A:188
binding site for Poly-Saccharide residues NAG A 603 through NAG A 604 bound to ASN A 106
12
AD3
SOFTWARE
GLU A:238 , ASN A:241 , ASN A:245
binding site for Mono-Saccharide NAG A 605 bound to ASN A 241
13
AD4
SOFTWARE
SER A:338 , ASN A:341
binding site for Mono-Saccharide NAG A 606 bound to ASN A 341
14
AD5
SOFTWARE
ASN A:473 , TYR A:477 , ASN A:481 , GLU A:482 , ASP B:87 , LEU B:88 , GLN B:270
binding site for Poly-Saccharide residues NAG A 607 through NAG A 608 bound to ASN A 481
15
AD6
SOFTWARE
ILE B:4 , ASN B:17 , THR B:24
binding site for Mono-Saccharide NAG B 601 bound to ASN B 17
16
AD7
SOFTWARE
ASN B:106 , ASN B:188
binding site for Mono-Saccharide NAG B 603 bound to ASN B 106
17
AD8
SOFTWARE
ASN B:241 , ASN B:245 , PRO B:281
binding site for Mono-Saccharide NAG B 604 bound to ASN B 241
18
AD9
SOFTWARE
ASN B:256
binding site for Mono-Saccharide NAG B 605 bound to ASN B 256
19
AE1
SOFTWARE
GLY B:336 , SER B:338 , ASN B:341
binding site for Poly-Saccharide residues NAG B 606 through NAG B 607 bound to ASN B 341
20
AE2
SOFTWARE
ASN B:481 , GLU B:482 , THR B:483
binding site for Mono-Saccharide NAG B 608 bound to ASN B 481
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0 ; only for superseded entry 4AQD: 1,2)
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1a: SCOP_d4aqda_ ()
1b: SCOP_d4aqdb_ ()
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Asymmetric Unit 1
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Asym.Unit (380 KB)
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