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5K1V
Biol. Unit 1
Info
Asym.Unit (308 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) IN COMPLEX WITH A DIAMINOBENZOIC ACID DERIVATIVE LIGAND.
Authors
:
E. Saridakis, A. Papakyriakou, P. Giastas, A. Mpakali, I. M. Mavridis, E. Stratikos
Date
:
18 May 16 (Deposition) - 29 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Endoplasmic Reticulum Aminopeptidase, Hydrolase, Zinc-Binding Metallopeptidase, Diaminobenzoic Acid Derivative
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mpakali, P. Giastas, R. Deprez-Poulain, A. Papakyriakou, D. Koumantou, R. Gealageas, S. Tsoukalidou, D. Vourloumis, I. M. Mavridis, E. Stratikos, E. Saridakis
Crystal Structures Of Erap2 Complexed With Inhibitors Revea Pharmacophore Requirements For Optimizing Inhibitor Potency
Acs Med Chem Lett V. 8 333 2017
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: METHYL N-[4-AMINO-3-(L-ARGINYLAMIN... (6PXa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6PX
1
Ligand/Ion
METHYL N-[4-AMINO-3-(L-ARGINYLAMINO)BENZENE-1-CARBONYL]-L-TYROSINATE
2
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC4 (SOFTWARE)
04: AC5 (SOFTWARE)
05: AC6 (SOFTWARE)
06: AC7 (SOFTWARE)
07: AC8 (SOFTWARE)
08: AC9 (SOFTWARE)
09: AD1 (SOFTWARE)
10: AD2 (SOFTWARE)
11: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:370 , HIS A:374 , GLU A:393 , 6PX A:1002
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ASP A:198 , GLU A:200 , ALA A:332 , PRO A:333 , GLY A:334 , ALA A:335 , GLU A:337 , HIS A:370 , GLU A:371 , HIS A:374 , LYS A:392 , GLU A:393 , ASP A:451 , GLU A:452 , TYR A:455 , TYR A:892 , ZN A:1001
binding site for residue 6PX A 1002
03
AC4
SOFTWARE
HIS A:83 , ASN A:85 , GLU A:227 , LEU A:248 , ASP B:291 , ARG B:293
binding site for Poly-Saccharide residues NAG A 1003 through NAG A 1004 bound to ASN A 85
04
AC5
SOFTWARE
ASN A:103 , HOH A:1104
binding site for Mono-Saccharide NAG A 1010 bound to ASN A 103
05
AC6
SOFTWARE
ASN A:219 , THR A:255 , VAL A:257 , LYS A:258 , TYR A:487
binding site for Poly-Saccharide residues NAG A 1005 through NAG A 1006 bound to ASN A 219
06
AC7
SOFTWARE
ARG A:293 , ASN A:294
binding site for Mono-Saccharide NAG A 1009 bound to ASN A 294
07
AC8
SOFTWARE
ASN A:405 , ASP A:414 , HOH A:1110
binding site for Mono-Saccharide NAG A 1007 bound to ASN A 405
08
AC9
SOFTWARE
ASN A:431 , LYS A:545 , GLU A:576 , HOH A:1124
binding site for Mono-Saccharide NAG A 1011 bound to ASN A 431
09
AD1
SOFTWARE
ASN A:650
binding site for Mono-Saccharide NAG A 1008 bound to ASN A 650
10
AD2
SOFTWARE
ASN A:714
binding site for Mono-Saccharide NAG A 1012 bound to ASN A 714
11
AD3
SOFTWARE
HIS A:272 , ASP A:291 , ARG A:293 , HIS B:83 , PRO B:84 , ASN B:85 , GLU B:227 , GLY B:246 , LEU B:248
binding site for Poly-Saccharide residues NAG B 1003 through MAN B 1006 bound to ASN B 85
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SAPs(SNPs)/Variants
(0, 0)
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Exons
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SCOP Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (308 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
Header - Biol.Unit 2
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