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5K1V
Asym. Unit
Info
Asym.Unit (308 KB)
Biol.Unit 1 (157 KB)
Biol.Unit 2 (149 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) IN COMPLEX WITH A DIAMINOBENZOIC ACID DERIVATIVE LIGAND.
Authors
:
E. Saridakis, A. Papakyriakou, P. Giastas, A. Mpakali, I. M. Mavridis, E. Stratikos
Date
:
18 May 16 (Deposition) - 29 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Endoplasmic Reticulum Aminopeptidase, Hydrolase, Zinc-Binding Metallopeptidase, Diaminobenzoic Acid Derivative
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Mpakali, P. Giastas, R. Deprez-Poulain, A. Papakyriakou, D. Koumantou, R. Gealageas, S. Tsoukalidou, D. Vourloumis, I. M. Mavridis, E. Stratikos, E. Saridakis
Crystal Structures Of Erap2 Complexed With Inhibitors Revea Pharmacophore Requirements For Optimizing Inhibitor Potency
Acs Med Chem Lett V. 8 333 2017
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Hetero Components
(4, 23)
Info
All Hetero Components
1a: METHYL N-[4-AMINO-3-(L-ARGINYLAMIN... (6PXa)
2a: ALPHA-D-MANNOSE (MANa)
2b: ALPHA-D-MANNOSE (MANb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
6PX
1
Ligand/Ion
METHYL N-[4-AMINO-3-(L-ARGINYLAMINO)BENZENE-1-CARBONYL]-L-TYROSINATE
2
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
18
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
ZN
2
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:370 , HIS A:374 , GLU A:393 , 6PX A:1002
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ASP A:198 , GLU A:200 , ALA A:332 , PRO A:333 , GLY A:334 , ALA A:335 , GLU A:337 , HIS A:370 , GLU A:371 , HIS A:374 , LYS A:392 , GLU A:393 , ASP A:451 , GLU A:452 , TYR A:455 , TYR A:892 , ZN A:1001
binding site for residue 6PX A 1002
03
AC3
SOFTWARE
HIS B:370 , HIS B:374 , GLU B:393 , HOH B:1114
binding site for residue ZN B 1001
04
AC4
SOFTWARE
HIS A:83 , ASN A:85 , GLU A:227 , LEU A:248 , ASP B:291 , ARG B:293
binding site for Poly-Saccharide residues NAG A 1003 through NAG A 1004 bound to ASN A 85
05
AC5
SOFTWARE
ASN A:103 , HOH A:1104
binding site for Mono-Saccharide NAG A 1010 bound to ASN A 103
06
AC6
SOFTWARE
ASN A:219 , THR A:255 , VAL A:257 , LYS A:258 , TYR A:487
binding site for Poly-Saccharide residues NAG A 1005 through NAG A 1006 bound to ASN A 219
07
AC7
SOFTWARE
ARG A:293 , ASN A:294
binding site for Mono-Saccharide NAG A 1009 bound to ASN A 294
08
AC8
SOFTWARE
ASN A:405 , ASP A:414 , HOH A:1110
binding site for Mono-Saccharide NAG A 1007 bound to ASN A 405
09
AC9
SOFTWARE
ASN A:431 , LYS A:545 , GLU A:576 , HOH A:1124
binding site for Mono-Saccharide NAG A 1011 bound to ASN A 431
10
AD1
SOFTWARE
ASN A:650
binding site for Mono-Saccharide NAG A 1008 bound to ASN A 650
11
AD2
SOFTWARE
ASN A:714
binding site for Mono-Saccharide NAG A 1012 bound to ASN A 714
12
AD3
SOFTWARE
HIS A:272 , ASP A:291 , ARG A:293 , HIS B:83 , PRO B:84 , ASN B:85 , GLU B:227 , GLY B:246 , LEU B:248
binding site for Poly-Saccharide residues NAG B 1003 through MAN B 1006 bound to ASN B 85
13
AD4
SOFTWARE
ASN B:103 , HOH B:1109
binding site for Mono-Saccharide NAG B 1002 bound to ASN B 103
14
AD5
SOFTWARE
LEU B:76 , ASN B:219 , THR B:256 , LYS B:258 , HOH B:1102
binding site for Mono-Saccharide NAG B 1007 bound to ASN B 219
15
AD6
SOFTWARE
ASN B:294
binding site for Mono-Saccharide NAG B 1011 bound to ASN B 294
16
AD7
SOFTWARE
ASN B:405 , ASP B:414
binding site for Mono-Saccharide NAG B 1009 bound to ASN B 405
17
AD8
SOFTWARE
ASN B:431 , GLU B:936
binding site for Mono-Saccharide NAG B 1010 bound to ASN B 431
18
AD9
SOFTWARE
ASN B:650
binding site for Mono-Saccharide NAG B 1008 bound to ASN B 650
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SAPs(SNPs)/Variants
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (308 KB)
Header - Asym.Unit
Biol.Unit 1 (157 KB)
Header - Biol.Unit 1
Biol.Unit 2 (149 KB)
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