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5JX3
Biol. Unit 3
Info
Asym.Unit (308 KB)
Biol.Unit 1 (81 KB)
Biol.Unit 2 (80 KB)
Biol.Unit 3 (80 KB)
Biol.Unit 4 (78 KB)
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(1)
Title
:
WILD TYPE D4 IN ORTHORHOMBIC SPACE GROUP
Authors
:
N. Schormann, D. Chattopadhyay
Date
:
12 May 16 (Deposition) - 29 Jun 16 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Dna Repair Enzyme Component Of Processivity Factor Poxvirus, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
N. Schormann, N. Zhukovskaya, G. Bedwell, M. Nuth, R. Gillilan, P. E. Prevelige, R. P. Ricciardi, S. Banerjee, D. Chattopadhyay
Poxvirus Uracil-Dna Glycosylase-An Unusual Member Of The Family I Uracil-Dna Glycosylases.
Protein Sci. V. 25 2113 2016
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
2o: GLYCEROL (GOLo)
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No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
GOL
4
Ligand/Ion
GLYCEROL
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Sites
(6, 6)
Info
All Sites
1: AC7 (SOFTWARE)
2: AD1 (SOFTWARE)
3: AD2 (SOFTWARE)
4: AD3 (SOFTWARE)
5: AD4 (SOFTWARE)
6: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC7
SOFTWARE
GLU D:32 , VAL D:33 , TYR D:136 , TRP D:137 , ASP D:138 , LYS D:139 , ILE D:140 , HOH D:446 , ASN E:165
binding site for residue GOL D 301
2
AD1
SOFTWARE
GLY E:66 , ILE E:67 , ASP E:68 , TYR E:70 , PHE E:79 , SER E:88 , ASN E:120 , HOH E:467
binding site for residue GOL E 301
3
AD2
SOFTWARE
LYS D:126 , ARG E:39 , ASP E:40 , HOH E:415 , TYR G:11
binding site for residue GOL E 302
4
AD3
SOFTWARE
GLY F:66 , ASP F:68 , TYR F:70 , PHE F:79 , SER F:88 , ASN F:120 , HOH F:404 , HOH F:440
binding site for residue GOL F 301
5
AD4
SOFTWARE
LYS F:160 , THR F:161 , TYR F:180 , HIS F:181 , ARG F:185
binding site for residue GOL F 302
6
AD5
SOFTWARE
SER F:7 , HIS F:8 , TYR F:30 , ASN F:31 , ALA F:34
binding site for residue CL F 303
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (308 KB)
Header - Asym.Unit
Biol.Unit 1 (81 KB)
Header - Biol.Unit 1
Biol.Unit 2 (80 KB)
Header - Biol.Unit 2
Biol.Unit 3 (80 KB)
Header - Biol.Unit 3
Biol.Unit 4 (78 KB)
Header - Biol.Unit 4
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