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Asym. Unit
Info
Asym.Unit (38 KB)
Biol.Unit 1 (16 KB)
Biol.Unit 2 (16 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF MITHRAMYCIN ANALOGUE MTM SA-TRP IN COMPLEX WITH A 10-MER DNA AGAGGCCTCT.
Authors
:
C. Hou, J. Rohr, O. V. Tsodikov
Date
:
11 May 16 (Deposition) - 14 Sep 16 (Release) - 26 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Anti-Cancer Agent, Ewing Sarcoma, Transcription Factor, Minor Groove, Dna Binding, Dna-Antibiotic Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Hou, S. Weidenbach, K. E. Cano, Z. Wang, P. Mitra, D. N. Ivanov, J. Rohr, O. V. Tsodikov
Structures Of Mithramycin Analogues Bound To Dna And Implications For Targeting Transcription Factor Fli1.
Nucleic Acids Res. V. 44 8990 2016
[
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Hetero Components
(3, 24)
Info
All Hetero Components
1a: PLICAMYCIN, MITHRAMYCIN ANALOGUE M... (6O6a)
1b: PLICAMYCIN, MITHRAMYCIN ANALOGUE M... (6O6b)
1c: PLICAMYCIN, MITHRAMYCIN ANALOGUE M... (6O6c)
1d: PLICAMYCIN, MITHRAMYCIN ANALOGUE M... (6O6d)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
2e: SODIUM ION (NAe)
2f: SODIUM ION (NAf)
2g: SODIUM ION (NAg)
3a: ZINC ION (ZNa)
3b: ZINC ION (ZNb)
3c: ZINC ION (ZNc)
3d: ZINC ION (ZNd)
3e: ZINC ION (ZNe)
3f: ZINC ION (ZNf)
3g: ZINC ION (ZNg)
3h: ZINC ION (ZNh)
3i: ZINC ION (ZNi)
3j: ZINC ION (ZNj)
3k: ZINC ION (ZNk)
3l: ZINC ION (ZNl)
3m: ZINC ION (ZNm)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6O6
4
Ligand/Ion
PLICAMYCIN, MITHRAMYCIN ANALOGUE MTM SA-TRP
2
NA
7
Ligand/Ion
SODIUM ION
3
ZN
13
Ligand/Ion
ZINC ION
[
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Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
DG A:4 , HOH A:217 , HOH A:218 , HOH A:224 , HOH A:230 , HOH A:243
binding site for residue ZN A 101
02
AC2
SOFTWARE
HOH A:201 , 6O6 B:101 , 6O6 C:101 , HOH C:208
binding site for residue ZN A 102
03
AC3
SOFTWARE
DA A:1 , HOH A:221 , HOH A:226 , HOH A:233 , HOH A:242
binding site for residue ZN A 103
04
AC4
SOFTWARE
DG A:2 , DA A:3
binding site for residue NA A 104
05
AC5
SOFTWARE
DG A:4 , DG A:5 , DC A:7 , ZN A:102 , HOH A:201 , DG B:5 , DC B:6 , DC B:7 , DT B:8 , DC B:9 , HOH B:202 , HOH B:205 , HOH B:206 , HOH B:212 , HOH B:216 , HOH B:222 , HOH B:227 , HOH B:228 , HOH B:230 , HOH B:242 , HOH B:254 , 6O6 C:101 , HOH C:208
binding site for residue 6O6 B 101
06
AC6
SOFTWARE
DT A:10 , DA B:1 , HOH B:201 , HOH B:208 , HOH B:211 , HOH B:217 , HOH B:221 , HOH B:224 , HOH B:235 , HOH B:237 , HOH B:238 , HOH B:244 , DG C:4 , DG C:5 , 6O6 C:102 , ZN C:105 , HOH C:215 , DA D:3 , DG D:5 , DC D:6 , DC D:7 , DT D:8 , DC D:9 , HOH D:201
binding site for residue 6O6 B 102
07
AC7
SOFTWARE
DG B:4 , ZN B:105 , HOH B:232 , HOH B:243 , HOH B:248 , HOH B:252
binding site for residue ZN B 103
08
AC8
SOFTWARE
DA B:1 , HOH B:219 , HOH B:223 , HOH B:246 , HOH B:261 , HOH D:212
binding site for residue ZN B 104
09
AC9
SOFTWARE
DG B:5 , ZN B:103 , HOH B:248
binding site for residue ZN B 105
10
AD1
SOFTWARE
DG B:5 , HOH B:258
binding site for residue NA B 106
11
AD2
SOFTWARE
DG A:5 , DC A:6 , DC A:7 , DT A:8 , ZN A:102 , HOH A:201 , DG B:4 , DG B:5 , 6O6 B:101 , DA C:1 , HOH C:201 , HOH C:202 , HOH C:208 , HOH C:210 , HOH C:214 , HOH C:228 , HOH C:235 , DT D:10
binding site for residue 6O6 C 101
12
AD3
SOFTWARE
6O6 B:102 , HOH B:201 , DG C:5 , DC C:6 , DC C:7 , DT C:8 , DC C:9 , ZN C:105 , NA C:109 , HOH C:207 , HOH C:213 , HOH C:215 , HOH C:217 , HOH C:218 , HOH C:229 , HOH C:234 , HOH C:236 , DG D:4 , DG D:5 , NA D:103
binding site for residue 6O6 C 102
13
AD4
SOFTWARE
DG C:4 , ZN C:106
binding site for residue ZN C 103
14
AD5
SOFTWARE
DA C:1 , ZN C:107 , HOH C:219 , HOH C:230 , HOH C:232 , HOH C:237 , HOH C:243
binding site for residue ZN C 104
15
AD6
SOFTWARE
6O6 B:102 , HOH B:201 , 6O6 C:102 , HOH C:215
binding site for residue ZN C 105
16
AD7
SOFTWARE
DA C:3 , ZN C:103
binding site for residue ZN C 106
17
AD8
SOFTWARE
DA C:1 , DG C:2 , ZN C:104 , HOH C:230 , HOH C:237
binding site for residue ZN C 107
18
AD9
SOFTWARE
DC C:7
binding site for residue NA C 108
19
AE1
SOFTWARE
DT C:8 , 6O6 C:102 , HOH C:218
binding site for residue NA C 109
20
AE2
SOFTWARE
DG D:4 , HOH D:215 , HOH D:225 , HOH D:233
binding site for residue ZN D 101
21
AE3
SOFTWARE
DA D:1 , HOH D:213 , HOH D:220 , HOH D:223 , HOH D:232
binding site for residue ZN D 102
22
AE4
SOFTWARE
6O6 C:102 , HOH C:213 , DA D:3 , HOH D:231
binding site for residue NA D 103
23
AE5
SOFTWARE
DG D:5
binding site for residue NA D 104
24
AE6
SOFTWARE
DA D:1 , DG D:2 , HOH D:226 , HOH D:236
binding site for residue NA D 105
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (38 KB)
Header - Asym.Unit
Biol.Unit 1 (16 KB)
Header - Biol.Unit 1
Biol.Unit 2 (16 KB)
Header - Biol.Unit 2
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