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5JT1
Asym. Unit
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Asym.Unit (392 KB)
Biol.Unit 1 (384 KB)
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Title
:
THE 3D STRUCTURE OF NI-RECONSTITUTED U489C VARIANT OF [NIFESE] HYDROGENASE FROM DESULFOVIBRIO VULGARIS HILDENBOROUGH IN THE OXIDIZED STATE AT 1.35 ANGSTROM RESOLUTION
Authors
:
M. C. Marques, I. A. C. Pereira, P. M. Matias
Date
:
09 May 16 (Deposition) - 22 Mar 17 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.35
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Nifese-Site H2 Cleavage/Production, Oxidoreductase
(Keyword Search:
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Reference
:
M. C. Marques, C. Tapia, O. Gutierrez-Sanz, A. R. Ramos, K. L. Keller, J. D. Wall, A. L. De Lacey, P. M. Matias, I. A. C. Pereira
The Direct Role Of Selenocysteine In [Nifese] Hydrogenase Maturation And Catalysis.
Nat. Chem. Biol. V. 13 544 2017
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Hetero Components
(8, 10)
Info
All Hetero Components
1a: OXYGEN-DAMAGED SF4 (6MLa)
2a: 3-SULFINOALANINE (CSDa)
3a: S-OXY CYSTEINE (CSXa)
4a: CARBONMONOXIDE-(DICYANO) IRON (FCOa)
5a: FE (II) ION (FE2a)
6a: HYDROSULFURIC ACID (H2Sa)
7a: NICKEL (II) ION (NIa)
8a: IRON/SULFUR CLUSTER (SF4a)
8b: IRON/SULFUR CLUSTER (SF4b)
8c: IRON/SULFUR CLUSTER (SF4c)
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No.
Name
Count
Type
Full Name
1
6ML
1
Ligand/Ion
OXYGEN-DAMAGED SF4
2
CSD
1
Mod. Residue
3-SULFINOALANINE
3
CSX
1
Mod. Amino Acid
S-OXY CYSTEINE
4
FCO
1
Ligand/Ion
CARBONMONOXIDE-(DICYANO) IRON
5
FE2
1
Ligand/Ion
FE (II) ION
6
H2S
1
Ligand/Ion
HYDROSULFURIC ACID
7
NI
1
Ligand/Ion
NICKEL (II) ION
8
SF4
3
Ligand/Ion
IRON/SULFUR CLUSTER
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:208 , CYS A:211 , TYR A:213 , LEU A:214 , CYS A:232 , ARG A:233 , CYS A:238 , VAL A:260
binding site for residue SF4 A 301
2
AC2
SOFTWARE
THR A:243 , CYS A:247 , TRP A:252 , CYS A:259 , CYS A:265 , ILE A:266 , CYS A:268 , ARG B:182 , GLN B:187
binding site for residue SF4 A 302
3
AC3
SOFTWARE
GLY A:17 , CYS A:18 , CYS A:21 , GLU A:77 , GLY A:119 , THR A:120 , CYS A:121 , GLY A:158 , CYS A:159 , 6ML A:304 , ARG B:73 , HIS B:185
binding site for residue SF4 A 303
4
AC4
SOFTWARE
CYS A:18 , THR A:19 , GLY A:20 , CYS A:21 , GLU A:77 , THR A:120 , CYS A:121 , GLY A:158 , CYS A:159 , PRO A:160 , SF4 A:303 , HOH A:422 , HIS B:185
binding site for residue 6ML A 304
5
AC5
SOFTWARE
CYS B:75 , CYS B:78 , HIS B:82 , ALA B:420 , PRO B:421 , ARG B:422 , ALA B:444 , SER B:445 , CYS B:489 , CSD B:489 , CYS B:492 , NI B:602 , HOH B:1056
binding site for residue FCO B 601
6
AC6
SOFTWARE
CSX B:75 , CYS B:75 , CYS B:78 , CSD B:489 , CYS B:489 , CYS B:492 , FCO B:601 , HOH B:1056
binding site for residue NI B 602
7
AC7
SOFTWARE
GLU B:56 , ILE B:441 , HIS B:495 , HOH B:713 , HOH B:720 , HOH B:741
binding site for residue FE2 B 603
8
AC8
SOFTWARE
CYS B:78 , THR B:80 , ALA B:81 , PHE B:110 , ASN B:113 , PRO B:421
binding site for residue H2S B 604
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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Asymmetric Unit 1
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