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Biol. Unit 2
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Asym.Unit (190 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
BRAFV600E KINASE DOMAIN IN COMPLEX WITH CHEMICALLY LINKED VEMURAFENIB INHIBITOR VEM-3-VEM
Authors
:
M. J. Grasso, R. Marmorstein
Date
:
08 May 16 (Deposition) - 14 Sep 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Kinase, Dimer, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grasso, M. A. Estrada, C. Ventocilla, M. Samanta, J. Maksimoska, J. Villanueva, J. D. Winkler, R. Marmorstein
Chemically Linked Vemurafenib Inhibitors Promote An Inactiv Braf(V600E) Conformation.
Acs Chem. Biol. V. 11 2876 2016
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Hetero Components
(2, 3)
Info
All Hetero Components
1a: N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE... (6NBa)
1b: N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE... (6NBb)
2a: BENZAMIDINE (BENa)
2b: BENZAMIDINE (BENb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
4f: DIMETHYL SULFOXIDE (DMSf)
5a: ETHANOL (EOHa)
5b: ETHANOL (EOHb)
5c: ETHANOL (EOHc)
6a: GLYCEROL (GOLa)
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Label:
No.
Name
Count
Type
Full Name
1
6NB
1
Ligand/Ion
N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE-2,1-DIYLOXY-4,1-PHENYLENE-1H-PYRROLO[2,3-B]PYRIDINE-5,3-DIYLCARBONYL(2,4-DIFLUORO-3,1-PHENYLENE)]}DI(PROPANE-1-SULFONAMIDE)
2
BEN
-1
Ligand/Ion
BENZAMIDINE
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
DMS
2
Ligand/Ion
DIMETHYL SULFOXIDE
5
EOH
-1
Ligand/Ion
ETHANOL
6
GOL
-1
Ligand/Ion
GLYCEROL
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Sites
(8, 8)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AD2 (SOFTWARE)
4: AD3 (SOFTWARE)
5: AD4 (SOFTWARE)
6: AD5 (SOFTWARE)
7: AD6 (SOFTWARE)
8: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
TRP A:450 , ARG A:509 , PHE A:516 , MET A:517 , ASP D:449 , TRP D:450 , GLU D:451 , MET D:517 , CL D:802
binding site for residue BEN A 804
2
AC5
SOFTWARE
ASP A:587 , GLY D:455
binding site for residue EOH A 805
3
AD2
SOFTWARE
ASP B:449 , TRP B:450 , MET B:517 , CL B:808 , TRP C:450 , ARG C:509 , MET C:517 , HOH C:938
binding site for residue BEN B 807
4
AD3
SOFTWARE
TRP B:450 , PHE B:516 , BEN B:807 , HOH C:938
binding site for residue CL B 808
5
AD4
SOFTWARE
GLN C:461 , ILE C:463 , VAL C:471 , ALA C:481 , LYS C:483 , LEU C:514 , THR C:529 , GLN C:530 , TRP C:531 , CYS C:532 , SER C:535 , HIS C:539 , PHE C:583 , GLY C:593 , ASP C:594 , PHE C:595 , GLY C:596 , DMS C:802 , HOH C:917 , GLN D:461 , ILE D:463 , VAL D:471 , ALA D:481 , LYS D:483 , LEU D:514 , THR D:529 , GLN D:530 , TRP D:531 , CYS D:532 , SER D:535 , PHE D:583 , GLY D:593 , ASP D:594 , PHE D:595 , GLY D:596 , HOH D:929
binding site for residue 6NB C 801
6
AD5
SOFTWARE
ILE C:463 , HIS C:539 , 6NB C:801
binding site for residue DMS C 802
7
AD6
SOFTWARE
SER D:465 , ASN D:580 , HOH D:929
binding site for residue DMS D 801
8
AD7
SOFTWARE
BEN A:804 , HOH A:960 , TRP D:450 , PHE D:516
binding site for residue CL D 802
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (190 KB)
Header - Asym.Unit
Biol.Unit 1 (95 KB)
Header - Biol.Unit 1
Biol.Unit 2 (90 KB)
Header - Biol.Unit 2
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