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Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (95 KB)
Biol.Unit 2 (90 KB)
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(1)
Title
:
BRAFV600E KINASE DOMAIN IN COMPLEX WITH CHEMICALLY LINKED VEMURAFENIB INHIBITOR VEM-3-VEM
Authors
:
M. J. Grasso, R. Marmorstein
Date
:
08 May 16 (Deposition) - 14 Sep 16 (Release) - 02 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.19
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Kinase, Dimer, Transferase-Transferase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Grasso, M. A. Estrada, C. Ventocilla, M. Samanta, J. Maksimoska, J. Villanueva, J. D. Winkler, R. Marmorstein
Chemically Linked Vemurafenib Inhibitors Promote An Inactiv Braf(V600E) Conformation.
Acs Chem. Biol. V. 11 2876 2016
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Hetero Components
(6, 17)
Info
All Hetero Components
1a: N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE... (6NBa)
1b: N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE... (6NBb)
2a: BENZAMIDINE (BENa)
2b: BENZAMIDINE (BENb)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: DIMETHYL SULFOXIDE (DMSa)
4b: DIMETHYL SULFOXIDE (DMSb)
4c: DIMETHYL SULFOXIDE (DMSc)
4d: DIMETHYL SULFOXIDE (DMSd)
4e: DIMETHYL SULFOXIDE (DMSe)
4f: DIMETHYL SULFOXIDE (DMSf)
5a: ETHANOL (EOHa)
5b: ETHANOL (EOHb)
5c: ETHANOL (EOHc)
6a: GLYCEROL (GOLa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
6NB
2
Ligand/Ion
N,N'-{ETHANE-1,2-DIYLBIS[OXYETHANE-2,1-DIYLOXY-4,1-PHENYLENE-1H-PYRROLO[2,3-B]PYRIDINE-5,3-DIYLCARBONYL(2,4-DIFLUORO-3,1-PHENYLENE)]}DI(PROPANE-1-SULFONAMIDE)
2
BEN
2
Ligand/Ion
BENZAMIDINE
3
CL
3
Ligand/Ion
CHLORIDE ION
4
DMS
6
Ligand/Ion
DIMETHYL SULFOXIDE
5
EOH
3
Ligand/Ion
ETHANOL
6
GOL
1
Ligand/Ion
GLYCEROL
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:568 , PHE A:635
binding site for residue DMS A 801
02
AC2
SOFTWARE
GLY A:464 , SER A:465 , GLY A:466 , ASN A:580 , HOH A:927 , HOH A:929 , HOH A:969 , 6NB B:801
binding site for residue DMS A 802
03
AC3
SOFTWARE
LEU A:678
binding site for residue DMS A 803
04
AC4
SOFTWARE
TRP A:450 , ARG A:509 , PHE A:516 , MET A:517 , ASP D:449 , TRP D:450 , GLU D:451 , MET D:517 , CL D:802
binding site for residue BEN A 804
05
AC5
SOFTWARE
ASP A:587 , GLY D:455
binding site for residue EOH A 805
06
AC6
SOFTWARE
GLN A:461 , ILE A:463 , VAL A:471 , ALA A:481 , LYS A:483 , LEU A:514 , THR A:529 , GLN A:530 , TRP A:531 , CYS A:532 , SER A:535 , HIS A:539 , PHE A:583 , GLY A:593 , ASP A:594 , PHE A:595 , GLY A:596 , DMS A:802 , HOH A:927 , GLN B:461 , ILE B:463 , VAL B:471 , ALA B:481 , LYS B:483 , LEU B:514 , THR B:529 , GLN B:530 , TRP B:531 , CYS B:532 , SER B:535 , HIS B:539 , PHE B:583 , GLY B:593 , ASP B:594 , PHE B:595 , GLY B:596 , DMS B:802 , HOH B:911 , HOH B:926
binding site for residue 6NB B 801
07
AC7
SOFTWARE
GLY B:464 , SER B:465 , VAL B:471 , 6NB B:801
binding site for residue DMS B 802
08
AC8
SOFTWARE
PHE B:447 , LYS B:499 , VAL B:502 , GLY B:503 , ARG B:506
binding site for residue CL B 803
09
AC9
SOFTWARE
LEU B:485 , VAL B:487
binding site for residue EOH B 805
10
AD1
SOFTWARE
LYS B:507 , TYR B:566 , LYS B:570
binding site for residue GOL B 806
11
AD2
SOFTWARE
ASP B:449 , TRP B:450 , MET B:517 , CL B:808 , TRP C:450 , ARG C:509 , MET C:517 , HOH C:938
binding site for residue BEN B 807
12
AD3
SOFTWARE
TRP B:450 , PHE B:516 , BEN B:807 , HOH C:938
binding site for residue CL B 808
13
AD4
SOFTWARE
GLN C:461 , ILE C:463 , VAL C:471 , ALA C:481 , LYS C:483 , LEU C:514 , THR C:529 , GLN C:530 , TRP C:531 , CYS C:532 , SER C:535 , HIS C:539 , PHE C:583 , GLY C:593 , ASP C:594 , PHE C:595 , GLY C:596 , DMS C:802 , HOH C:917 , GLN D:461 , ILE D:463 , VAL D:471 , ALA D:481 , LYS D:483 , LEU D:514 , THR D:529 , GLN D:530 , TRP D:531 , CYS D:532 , SER D:535 , PHE D:583 , GLY D:593 , ASP D:594 , PHE D:595 , GLY D:596 , HOH D:929
binding site for residue 6NB C 801
14
AD5
SOFTWARE
ILE C:463 , HIS C:539 , 6NB C:801
binding site for residue DMS C 802
15
AD6
SOFTWARE
SER D:465 , ASN D:580 , HOH D:929
binding site for residue DMS D 801
16
AD7
SOFTWARE
BEN A:804 , HOH A:960 , TRP D:450 , PHE D:516
binding site for residue CL D 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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Pfam Domains
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