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Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (654 KB)
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(1)
Title
:
UNCLEAVED PREFUSION OPTIMIZED GP140 TRIMER WITH AN ENGINEERED 10-RESIDUE HR1 TURN BOUND TO BROADLY NEUTRALIZING ANTIBODIES 8ANC195 AND PGT128
Authors
:
L. Kong, I. A. Wilson
Date
:
07 May 16 (Deposition) - 13 Jul 16 (Release) - 13 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
6.31
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (3x)
Keywords
:
Hiv-1 Trimer, Ufo, Sosip, Vaccine, Viral Protein-Immune System Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Kong, L. He, N. De Val, N. Vora, C. D. Morris, P. Azadnia, D. Sok, B. Zhou, D. R. Burton, A. B. Ward, I. A. Wilson, J. Zhu
Uncleaved Prefusion-Optimized Gp140 Trimers Derived From Analysis Of Hiv-1 Envelope Metastability.
Nat Commun V. 7 12040 2016
[
close entry info
]
Hetero Components
(3, 77)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
1c: BETA-D-MANNOSE (BMAc)
1d: BETA-D-MANNOSE (BMAd)
1e: BETA-D-MANNOSE (BMAe)
1f: BETA-D-MANNOSE (BMAf)
1g: BETA-D-MANNOSE (BMAg)
1h: BETA-D-MANNOSE (BMAh)
1i: BETA-D-MANNOSE (BMAi)
1j: BETA-D-MANNOSE (BMAj)
1k: BETA-D-MANNOSE (BMAk)
1l: BETA-D-MANNOSE (BMAl)
2a: ALPHA-D-MANNOSE (MANa)
2aa: ALPHA-D-MANNOSE (MANaa)
2ab: ALPHA-D-MANNOSE (MANab)
2ac: ALPHA-D-MANNOSE (MANac)
2ad: ALPHA-D-MANNOSE (MANad)
2ae: ALPHA-D-MANNOSE (MANae)
2af: ALPHA-D-MANNOSE (MANaf)
2ag: ALPHA-D-MANNOSE (MANag)
2b: ALPHA-D-MANNOSE (MANb)
2c: ALPHA-D-MANNOSE (MANc)
2d: ALPHA-D-MANNOSE (MANd)
2e: ALPHA-D-MANNOSE (MANe)
2f: ALPHA-D-MANNOSE (MANf)
2g: ALPHA-D-MANNOSE (MANg)
2h: ALPHA-D-MANNOSE (MANh)
2i: ALPHA-D-MANNOSE (MANi)
2j: ALPHA-D-MANNOSE (MANj)
2k: ALPHA-D-MANNOSE (MANk)
2l: ALPHA-D-MANNOSE (MANl)
2m: ALPHA-D-MANNOSE (MANm)
2n: ALPHA-D-MANNOSE (MANn)
2o: ALPHA-D-MANNOSE (MANo)
2p: ALPHA-D-MANNOSE (MANp)
2q: ALPHA-D-MANNOSE (MANq)
2r: ALPHA-D-MANNOSE (MANr)
2s: ALPHA-D-MANNOSE (MANs)
2t: ALPHA-D-MANNOSE (MANt)
2u: ALPHA-D-MANNOSE (MANu)
2v: ALPHA-D-MANNOSE (MANv)
2w: ALPHA-D-MANNOSE (MANw)
2x: ALPHA-D-MANNOSE (MANx)
2y: ALPHA-D-MANNOSE (MANy)
2z: ALPHA-D-MANNOSE (MANz)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
3aa: N-ACETYL-D-GLUCOSAMINE (NAGaa)
3ab: N-ACETYL-D-GLUCOSAMINE (NAGab)
3ac: N-ACETYL-D-GLUCOSAMINE (NAGac)
3ad: N-ACETYL-D-GLUCOSAMINE (NAGad)
3ae: N-ACETYL-D-GLUCOSAMINE (NAGae)
3af: N-ACETYL-D-GLUCOSAMINE (NAGaf)
3b: N-ACETYL-D-GLUCOSAMINE (NAGb)
3c: N-ACETYL-D-GLUCOSAMINE (NAGc)
3d: N-ACETYL-D-GLUCOSAMINE (NAGd)
3e: N-ACETYL-D-GLUCOSAMINE (NAGe)
3f: N-ACETYL-D-GLUCOSAMINE (NAGf)
3g: N-ACETYL-D-GLUCOSAMINE (NAGg)
3h: N-ACETYL-D-GLUCOSAMINE (NAGh)
3i: N-ACETYL-D-GLUCOSAMINE (NAGi)
3j: N-ACETYL-D-GLUCOSAMINE (NAGj)
3k: N-ACETYL-D-GLUCOSAMINE (NAGk)
3l: N-ACETYL-D-GLUCOSAMINE (NAGl)
3m: N-ACETYL-D-GLUCOSAMINE (NAGm)
3n: N-ACETYL-D-GLUCOSAMINE (NAGn)
3o: N-ACETYL-D-GLUCOSAMINE (NAGo)
3p: N-ACETYL-D-GLUCOSAMINE (NAGp)
3q: N-ACETYL-D-GLUCOSAMINE (NAGq)
3r: N-ACETYL-D-GLUCOSAMINE (NAGr)
3s: N-ACETYL-D-GLUCOSAMINE (NAGs)
3t: N-ACETYL-D-GLUCOSAMINE (NAGt)
3u: N-ACETYL-D-GLUCOSAMINE (NAGu)
3v: N-ACETYL-D-GLUCOSAMINE (NAGv)
3w: N-ACETYL-D-GLUCOSAMINE (NAGw)
3x: N-ACETYL-D-GLUCOSAMINE (NAGx)
3y: N-ACETYL-D-GLUCOSAMINE (NAGy)
3z: N-ACETYL-D-GLUCOSAMINE (NAGz)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
12
Ligand/Ion
BETA-D-MANNOSE
2
MAN
33
Ligand/Ion
ALPHA-D-MANNOSE
3
NAG
32
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN C:133 , ARG C:142 , ARG C:169
binding site for Mono-Saccharide NAG C 615 bound to ASN C 133
02
AC2
SOFTWARE
ARG A:100A , ASN C:147 , SER C:149 , TYR C:164 , ASP C:319
binding site for Poly-Saccharide residues NAG C 601 through NAG C 602 bound to ASN C 147
03
AC3
SOFTWARE
THR C:128 , GLN C:130 , ASN C:151
binding site for Poly-Saccharide residues NAG C 659 through BMA C 661 bound to ASN C 151
04
AC4
SOFTWARE
ARG C:191 , ASN C:196 , ARG C:307
binding site for Poly-Saccharide residues NAG C 603 through NAG C 604 bound to ASN C 196
05
AC5
SOFTWARE
ASN C:233 , ILE C:276 , HIS C:350 , THR E:19 , TRP E:55 , SER E:57 , SER E:58 , ALA E:59 , PHE E:63 , ARG E:64 , ARG E:66 , VAL E:67 , LEU E:68 , SER E:70 , ALA E:71 , VAL E:72 , ASP E:73 , LEU E:74 , ILE E:81 , SER E:82 , SER E:83 , GLU E:85 , LYS F:145 , GLN F:147 , GLN F:199
binding site for Poly-Saccharide residues GLY E 65 through MAN E 311 bound to ASN C 233
06
AC6
SOFTWARE
GLU C:210 , PRO C:211 , ASN C:261 , ASN C:375 , GLN C:437 , GLY C:438 , VAL C:443 , SER C:444 , NAG C:626 , MAN C:630 , NAG C:656
binding site for Poly-Saccharide residues NAG C 635 through MAN C 641 bound to ASN C 261
07
AC7
SOFTWARE
ASN C:275 , THR C:277 , ASN C:278 , GLN E:1 , HIS E:3 , VAL E:5 , GLN E:6 , TYR E:25 , GLY E:26
binding site for Poly-Saccharide residues NAG C 607 through MAN C 614 bound to ASN C 275
08
AC8
SOFTWARE
ASN C:294 , ASN C:330 , VAL C:331 , SER C:332
binding site for Poly-Saccharide residues NAG C 642 through MAN C 646 bound to ASN C 294
09
AC9
SOFTWARE
SER A:28 , ALA A:30 , HIS A:52A , ALA A:52C , SER A:52D , THR A:73 , ASN C:300 , MAN C:640 , MAN C:641
binding site for Poly-Saccharide residues NAG C 626 through MAN C 634 bound to ASN C 300
10
AD1
SOFTWARE
TYR A:52E , TRP A:56 , THR A:57 , TYR A:58 , HIS A:59 , VAL B:92 , GLY B:93 , ASN B:94 , TRP B:95 , ASP B:95A , THR C:296 , HIS C:328 , ASN C:330 , SER C:410
binding site for Poly-Saccharide residues NAG C 616 through MAN C 625 bound to ASN C 330
11
AD2
SOFTWARE
LYS C:333 , ASN C:337
binding site for Poly-Saccharide residues NAG C 653 through BMA C 655 bound to ASN C 337
12
AD3
SOFTWARE
ASN C:361 , ASN C:384 , SER C:386 , NAG C:605 , NAG C:606
binding site for Poly-Saccharide residues NAG C 647 through BMA C 649 bound to ASN C 361
13
AD4
SOFTWARE
ASN C:384 , SER C:386 , NAG C:647 , NAG C:650
binding site for Poly-Saccharide residues NAG C 605 through NAG C 606 bound to ASN C 384
14
AD5
SOFTWARE
ASN C:390 , NAG C:606
binding site for Poly-Saccharide residues NAG C 650 through BMA C 652 bound to ASN C 390
15
AD6
SOFTWARE
ASN C:261 , PRO C:290 , ASN C:445 , NAG C:635
binding site for Poly-Saccharide residues NAG C 656 through BMA C 658 bound to ASN C 445
16
AD7
SOFTWARE
ASN D:600 , SER D:602
binding site for Mono-Saccharide NAG D 705 bound to ASN D 600
17
AD8
SOFTWARE
ASN D:626 , ASN F:31 , ALA F:52 , ALA F:53
binding site for Poly-Saccharide residues NAG D 701 through MAN D 704 bound to ASN D 626
[
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SAPs(SNPs)/Variants
(0, 0)
Info
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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