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5JR2
Asym. Unit
Info
Asym.Unit (289 KB)
Biol.Unit 1 (74 KB)
Biol.Unit 2 (77 KB)
Biol.Unit 3 (71 KB)
Biol.Unit 4 (72 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE EPHA4 LBD IN COMPLEX WITH APYD3 PEPTIDE INHIBITOR
Authors
:
B. C. Lechtenberg, E. J. Olson, E. B. Pasquale, P. E. Dawson, S. J. Riedl
Date
:
05 May 16 (Deposition) - 06 Jul 16 (Release) - 05 Oct 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,E (1x)
Biol. Unit 2: B,F (1x)
Biol. Unit 3: C,G (1x)
Biol. Unit 4: D,H (1x)
Keywords
:
Receptor Tyrosine Kinase, Peptide Inhibitor, Ephrin, Als, Transferase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. J. Olson, B. C. Lechtenberg, C. Zhao, E. Rubio De La Torre, I. Lamberto, S. J. Riedl, P. E. Dawson, E. B. Pasquale
Modifications Of A Nanomolar Cyclic Peptide Antagonist For The Epha4 Receptor To Achieve High Plasma Stability.
Acs Med. Chem. Lett. V. 7 841 2016
[
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Hetero Components
(4, 26)
Info
All Hetero Components
1a: BETA-ALANINE (BALa)
1b: BETA-ALANINE (BALb)
1c: BETA-ALANINE (BALc)
1d: BETA-ALANINE (BALd)
1e: BETA-ALANINE (BALe)
1f: BETA-ALANINE (BALf)
1g: BETA-ALANINE (BALg)
1h: BETA-ALANINE (BALh)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
3a: HEXANE-1,6-DIOL (HEZa)
3b: HEXANE-1,6-DIOL (HEZb)
3c: HEXANE-1,6-DIOL (HEZc)
3d: HEXANE-1,6-DIOL (HEZd)
3e: HEXANE-1,6-DIOL (HEZe)
3f: HEXANE-1,6-DIOL (HEZf)
4a: AMINO GROUP (NH2a)
4b: AMINO GROUP (NH2b)
4c: AMINO GROUP (NH2c)
4d: AMINO GROUP (NH2d)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BAL
8
Mod. Amino Acid
BETA-ALANINE
2
GOL
8
Ligand/Ion
GLYCEROL
3
HEZ
6
Ligand/Ion
HEXANE-1,6-DIOL
4
NH2
4
Mod. Amino Acid
AMINO GROUP
[
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Sites
(30, 30)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:170 , ARG A:171 , LYS A:202 , HOH A:463 , HOH A:472 , HOH A:520
binding site for residue HEZ A 301
02
AC2
SOFTWARE
SER A:48 , ASN A:81 , TRP A:83 , ARG A:85 , ILE A:137 , GLU A:139 , PHE A:142 , HOH A:439 , HOH A:455 , LEU D:50 , GLU D:51
binding site for residue HEZ A 302
03
AC3
SOFTWARE
GLU A:30 , GLU A:100 , ARG A:198
binding site for residue GOL A 303
04
AC4
SOFTWARE
ARG A:96 , ASP A:172 , VAL A:173 , GLY A:174 , HOH A:434 , HOH A:438 , HOH A:522
binding site for residue GOL A 304
05
AC5
SOFTWARE
ASP A:158 , GLY A:160
binding site for residue GOL A 305
06
AC6
SOFTWARE
ILE B:170 , ARG B:171 , LYS B:202 , HOH B:467
binding site for residue HEZ B 301
07
AC7
SOFTWARE
THR B:104 , LEU B:105 , PHE B:154 , LYS B:165 , ASN B:167 , HOH B:476
binding site for residue HEZ B 302
08
AC8
SOFTWARE
GLY B:93 , ALA B:94 , GLN B:95 , ARG B:96 , TYR B:201 , LYS B:202 , HOH B:402 , HOH B:460 , HOH B:525
binding site for residue HEZ B 303
09
AC9
SOFTWARE
PRO B:27 , GLU B:30 , GLU B:100 , ARG B:198
binding site for residue GOL B 304
10
AD1
SOFTWARE
ASP B:158 , GLY B:160 , HOH B:404
binding site for residue GOL B 305
11
AD2
SOFTWARE
ARG B:96 , ASP B:172 , VAL B:173 , GLY B:174 , HOH B:457
binding site for residue GOL B 306
12
AD3
SOFTWARE
SER C:48 , ARG C:85 , ILE C:137 , GLU C:139 , PHE C:142 , HOH C:403 , HOH C:478 , HOH C:499 , HOH C:533
binding site for residue HEZ C 301
13
AD4
SOFTWARE
ARG C:96 , ASP C:172 , VAL C:173 , GLY C:174 , HOH C:455 , HOH C:490
binding site for residue GOL C 302
14
AD5
SOFTWARE
ARG D:96 , ASP D:172 , VAL D:173 , GLY D:174 , HOH D:483
binding site for residue GOL D 301
15
AD6
SOFTWARE
CYS A:73 , ASN A:74 , GLU A:77 , TYR E:3 , CYS E:4
binding site for Di-peptide BAL E 1 and PRO E 2
16
AD7
SOFTWARE
ARG A:162 , HOH A:452 , VAL E:5 , TYR E:6 , SER E:9 , HOH E:103 , HOH E:105
binding site for Di-peptide ARG E 7 and BAL E 8
17
AD8
SOFTWARE
ARG A:162 , TYR E:6 , ARG E:7 , TRP E:10 , SER E:11 , HOH E:102
binding site for Di-peptide BAL E 8 and SER E 9
18
AD9
SOFTWARE
TYR E:3 , CYS E:4 , SER E:11
binding site for Di-peptide CYS E 12 and NH2 E 13
19
AE1
SOFTWARE
CYS B:73 , ASN B:74 , GLU B:77 , TYR F:3 , CYS F:4 , HOH F:102
binding site for Di-peptide BAL F 1 and PRO F 2
20
AE2
SOFTWARE
ARG B:162 , HOH B:420 , VAL F:5 , TYR F:6 , SER F:9 , HOH F:106 , HOH F:108
binding site for Di-peptide ARG F 7 and BAL F 8
21
AE3
SOFTWARE
ARG B:162 , TYR F:6 , ARG F:7 , TRP F:10 , HOH F:104
binding site for Di-peptide BAL F 8 and SER F 9
22
AE4
SOFTWARE
TYR F:3 , CYS F:4 , SER F:11
binding site for Di-peptide CYS F 12 and NH2 F 13
23
AE5
SOFTWARE
CYS C:73 , ASN C:74 , GLU C:77 , PRO D:112 , GLY D:113 , HOH D:463 , TYR G:3 , CYS G:4 , HOH G:102
binding site for Di-peptide BAL G 1 and PRO G 2
24
AE6
SOFTWARE
ILE C:59 , HOH C:480 , VAL G:5 , TYR G:6 , SER G:9 , HOH G:103 , HOH G:105
binding site for Di-peptide ARG G 7 and BAL G 8
25
AE7
SOFTWARE
ARG C:162 , HOH C:404 , TYR G:6 , ARG G:7 , TRP G:10 , SER G:11 , HOH G:103
binding site for Di-peptide BAL G 8 and SER G 9
26
AE8
SOFTWARE
GLY D:113 , MET D:115 , HOH D:468 , TYR G:3 , CYS G:4 , SER G:11 , HOH G:106
binding site for Di-peptide CYS G 12 and NH2 G 13
27
AE9
SOFTWARE
GLY D:52 , CYS D:73 , ASN D:74 , GLU D:77 , HOH D:456 , TYR H:3 , CYS H:4 , HOH H:102 , HOH H:104
binding site for Di-peptide BAL H 1 and PRO H 2
28
AF1
SOFTWARE
ILE D:59 , ARG D:162 , HOH D:431 , VAL H:5 , TYR H:6 , SER H:9 , HOH H:101
binding site for Di-peptide ARG H 7 and BAL H 8
29
AF2
SOFTWARE
TYR H:6 , ARG H:7 , TRP H:10 , SER H:11 , HOH H:101
binding site for Di-peptide BAL H 8 and SER H 9
30
AF3
SOFTWARE
TYR H:3 , CYS H:4 , SER H:11 , HOH H:106 , HOH H:107
binding site for Di-peptide CYS H 12 and NH2 H 13
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (289 KB)
Header - Asym.Unit
Biol.Unit 1 (74 KB)
Header - Biol.Unit 1
Biol.Unit 2 (77 KB)
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Biol.Unit 3 (71 KB)
Header - Biol.Unit 3
Biol.Unit 4 (72 KB)
Header - Biol.Unit 4
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