PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
5JNA
Biol. Unit 2
Info
Asym.Unit (399 KB)
Biol.Unit 1 (99 KB)
Biol.Unit 2 (98 KB)
Biol.Unit 3 (102 KB)
Biol.Unit 4 (102 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE FOR THE COMPLEX OF HUMAN CARBONIC ANHYDRASE IV AND TOPIRAMATE
Authors
:
Z. Chen, A. Waheed, E. Di Cera, W. S. Sly
Date
:
29 Apr 16 (Deposition) - 03 May 17 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Carbonic Anhydrase, Lyase, Zinc, Inhibitor Binding, Lyase-Lyase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mickeviciute, D. Timm, M. Gedgaudas, V. Linkuviene, Z. Chen, A. Waheed, E. Di Cera, W. S. Sly, V. Michailoviene, A. Zubriene, A. Smirnov, E. Capkauskaite, L. Baranauskiene, J. Jachno, J. Revuckiene, E. Manakova, S. Crazulis, J. Matuliene, D. Matulis
Characterization Of Recombinant Human Carbonic Anhydrase Iv Thermal Stability And Intrinsic Thermodynamics Of Inhibitor Binding
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(4, 5)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
4a: [(3AS,5AR,8AR,8BS)-2,2,7,7-TETRAME... (TORa)
4b: [(3AS,5AR,8AR,8BS)-2,2,7,7-TETRAME... (TORb)
4c: [(3AS,5AR,8AR,8BS)-2,2,7,7-TETRAME... (TORc)
4d: [(3AS,5AR,8AR,8BS)-2,2,7,7-TETRAME... (TORd)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
1
Ligand/Ion
ACETATE ION
2
GOL
1
Ligand/Ion
GLYCEROL
3
SO4
2
Ligand/Ion
SULFATE ION
4
TOR
1
Ligand/Ion
[(3AS,5AR,8AR,8BS)-2,2,7,7-TETRAMETHYLTETRAHYDRO-3AH-BIS[1,3]DIOXOLO[4,5-B:4',5'-D]PYRAN-3A-YL]METHYLSULFAMATE
5
ZN
-1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(7, 7)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC6 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: AD1 (SOFTWARE)
7: AD2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
ARG A:27 , LEU A:195 , ARG A:254 , THR A:255 , HOH A:451 , HOH A:562 , HOH B:547
binding site for residue SO4 A 303
2
AC6
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:119 , TOR B:302
binding site for residue ZN B 301
3
AC7
SOFTWARE
ASN B:62 , SER B:65 , GLN B:92 , HIS B:94 , HIS B:96 , HIS B:119 , LEU B:198 , THR B:199 , THR B:200 , ZN B:301 , HOH B:514
binding site for residue TOR B 302
4
AC8
SOFTWARE
ARG B:27 , LEU B:195 , ARG B:254 , THR B:255 , HOH B:414 , HOH B:483
binding site for residue SO4 B 303
5
AC9
SOFTWARE
GLY B:50A , TYR B:51 , ASP B:52 , LYS B:53 , HOH B:455
binding site for residue SO4 B 304
6
AD1
SOFTWARE
LYS B:15 , GLN D:158 , GLU D:162 , HOH D:559
binding site for residue ACT B 305
7
AD2
SOFTWARE
PHE B:48 , SER B:50 , SER B:78 , ILE B:79 , SER B:80 , PRO B:87 , GLN D:60
binding site for residue GOL B 306
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (399 KB)
Header - Asym.Unit
Biol.Unit 1 (99 KB)
Header - Biol.Unit 1
Biol.Unit 2 (98 KB)
Header - Biol.Unit 2
Biol.Unit 3 (102 KB)
Header - Biol.Unit 3
Biol.Unit 4 (102 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5JNA
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help