PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
No precomputed SNP/Variant structure found.
Calculating the structure may take several minutes.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
5JN9
Asym. Unit
Info
Asym.Unit (198 KB)
Biol.Unit 1 (52 KB)
Biol.Unit 2 (50 KB)
Biol.Unit 3 (52 KB)
Biol.Unit 4 (52 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE FOR THE COMPLEX OF HUMAN CARBONIC ANHYDRASE IV AND ETHOXYZOLAMIDE
Authors
:
Z. Chen, A. Waheed, E. Di Cera, W. S. Sly
Date
:
29 Apr 16 (Deposition) - 03 May 17 (Release) - 03 May 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Carbonic Anhydrase, Lyase, Inhibitor Binding, Lyase-Lyase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mickeviciute, D. Timm, M. Gedgaudas, V. Linkuviene, Z. Chen, A. Waheed, E. Di Cera, W. S. Sly, V. Michailoviene, A. Zubriene, A. Smirnov, E. Capkauskaite, L. Baranauskiene, J. Jachno, J. Revuckiene, E. Manakova, S. Grazulis, J. Matuliene, D. Matulis
Characterization Of Recombinant Human Carbonic Anhydrase Iv Thermal Stability And Intrinsic Thermodynamics Of Inhibitor Binding
To Be Published
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(5, 22)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
2a: 6-ETHOXY-1,3-BENZOTHIAZOLE-2-SULFO... (EZLa)
2b: 6-ETHOXY-1,3-BENZOTHIAZOLE-2-SULFO... (EZLb)
2c: 6-ETHOXY-1,3-BENZOTHIAZOLE-2-SULFO... (EZLc)
2d: 6-ETHOXY-1,3-BENZOTHIAZOLE-2-SULFO... (EZLd)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
4f: SULFATE ION (SO4f)
4g: SULFATE ION (SO4g)
4h: SULFATE ION (SO4h)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACT
2
Ligand/Ion
ACETATE ION
2
EZL
4
Ligand/Ion
6-ETHOXY-1,3-BENZOTHIAZOLE-2-SULFONAMIDE
3
GOL
4
Ligand/Ion
GLYCEROL
4
SO4
8
Ligand/Ion
SULFATE ION
5
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:94 , HIS A:96 , HIS A:119 , EZL A:302
binding site for residue ZN A 301
02
AC2
SOFTWARE
GLN A:92 , HIS A:94 , HIS A:96 , HIS A:119 , VAL A:121 , LEU A:198 , THR A:199 , THR A:200 , TRP A:209 , ZN A:301 , HOH A:583
binding site for residue EZL A 302
03
AC3
SOFTWARE
ARG A:27 , LEU A:195 , ARG A:254 , THR A:255 , HOH A:569 , HOH A:596 , HOH A:648
binding site for residue SO4 A 303
04
AC4
SOFTWARE
SER A:50 , GLY A:50A , TYR A:51 , ASP A:52 , LYS A:53 , HOH A:618
binding site for residue SO4 A 304
05
AC5
SOFTWARE
PHE A:48 , SER A:50 , SER A:78 , ILE A:79 , SER A:80 , HOH A:642 , GLN C:60
binding site for residue GOL A 305
06
AC6
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:119 , EZL B:302
binding site for residue ZN B 301
07
AC7
SOFTWARE
HIS B:94 , HIS B:96 , HIS B:119 , LEU B:198 , THR B:199 , THR B:200 , PRO B:201 , TRP B:209 , ZN B:301
binding site for residue EZL B 302
08
AC8
SOFTWARE
ARG B:27 , LEU B:195 , ARG B:254 , THR B:255 , HOH B:462
binding site for residue SO4 B 303
09
AC9
SOFTWARE
GLY B:50A , TYR B:51 , ASP B:52 , LYS B:53 , HOH B:486
binding site for residue SO4 B 304
10
AD1
SOFTWARE
LYS B:15 , GLN D:158 , GLU D:162
binding site for residue ACT B 305
11
AD2
SOFTWARE
PHE B:48 , SER B:50 , SER B:78 , ILE B:79 , SER B:80 , PRO B:87 , GLN D:60 , MET D:67
binding site for residue GOL B 306
12
AD3
SOFTWARE
HIS C:94 , HIS C:96 , HIS C:119 , EZL C:302
binding site for residue ZN C 301
13
AD4
SOFTWARE
GLN C:92 , HIS C:94 , HIS C:96 , HIS C:119 , VAL C:121 , LEU C:198 , THR C:199 , THR C:200 , TRP C:209 , ZN C:301 , HOH C:437
binding site for residue EZL C 302
14
AD5
SOFTWARE
ARG C:27 , LEU C:195 , ARG C:254 , THR C:255 , HOH C:424 , HOH C:463
binding site for residue SO4 C 303
15
AD6
SOFTWARE
GLY C:50A , TYR C:51 , ASP C:52 , LYS C:53 , HOH C:490 , HOH C:527
binding site for residue SO4 C 304
16
AD7
SOFTWARE
LYS C:103 , ASP C:243 , VAL C:245 , PRO C:247 , HOH C:471 , HOH C:484
binding site for residue GOL C 305
17
AD8
SOFTWARE
SER C:50 , GLY C:50A , ASN C:72 , ALA C:77 , SER C:78
binding site for residue GOL C 306
18
AD9
SOFTWARE
HIS D:94 , HIS D:96 , HIS D:119 , EZL D:302
binding site for residue ZN D 301
19
AE1
SOFTWARE
HIS D:94 , HIS D:96 , HIS D:119 , LEU D:198 , THR D:199 , THR D:200 , TRP D:209 , ZN D:301 , HOH D:698
binding site for residue EZL D 302
20
AE2
SOFTWARE
ARG D:27 , LEU D:195 , ARG D:254 , THR D:255 , HOH D:627 , HOH D:648
binding site for residue SO4 D 303
21
AE3
SOFTWARE
GLU A:2 , GLY D:50A , TYR D:51 , ASP D:52 , LYS D:53 , HOH D:725
binding site for residue SO4 D 304
22
AE4
SOFTWARE
SER D:98 , ASP D:99 , LEU D:100 , PRO D:101 , ALA D:115 , ALA D:150 , ILE D:223 , LEU D:224 , HOH D:615
binding site for residue ACT D 305
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
Select:
Label:
End label:
Sorry, no Info available
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (198 KB)
Header - Asym.Unit
Biol.Unit 1 (52 KB)
Header - Biol.Unit 1
Biol.Unit 2 (50 KB)
Header - Biol.Unit 2
Biol.Unit 3 (52 KB)
Header - Biol.Unit 3
Biol.Unit 4 (52 KB)
Header - Biol.Unit 4
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
5JN9
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help