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5JK0
Asym. Unit
Info
Asym.Unit (587 KB)
Biol.Unit 1 (581 KB)
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Title
:
CRYSTAL STRUCTURE OF XERH SITE-SPECIFIC RECOMBINASE BOUND TO DIFH SUBSTRATE: PRE-CLEAVAGE COMPLEX
Authors
:
A. Bebel, O. Barabas
Date
:
25 Apr 16 (Deposition) - 28 Dec 16 (Release) - 11 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Xer, Tyrosine Recombinase, Site-Specific Recombinase, Chromosome Dimer Resolution, Cell Cycle
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Bebel, E. Karaca, B. Kumar, W. M. Stark, O. Barabas
Structural Snapshots Of Xer Recombination Reveal Activation By Synaptic Complex Remodeling And Dna Bending.
Elife V. 5 2016
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
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Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
EDO
5
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
5
Ligand/Ion
GLYCEROL
4
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLN A:56 , HOH A:580 , HOH A:601 , LEU C:184 , PHE C:209
binding site for residue GOL A 401
02
AC2
SOFTWARE
TYR A:232 , LEU A:261
binding site for residue GOL A 402
03
AC3
SOFTWARE
TYR A:85 , PHE A:86 , LYS A:88 , PHE A:98
binding site for residue EDO A 403
04
AC4
SOFTWARE
LEU A:326 , LEU C:326
binding site for residue CL A 404
05
AC5
SOFTWARE
ASP B:140 , HOH B:598 , LYS D:141
binding site for residue GOL B 401
06
AC6
SOFTWARE
THR B:28 , LEU B:30 , SER B:31 , ASN B:32 , HOH B:535 , SER C:114
binding site for residue GOL B 402
07
AC7
SOFTWARE
TYR B:267 , GLN B:278 , HOH B:584
binding site for residue GOL B 403
08
AC8
SOFTWARE
GLN B:38 , ASN B:39 , LYS C:88 , TYR C:116
binding site for residue EDO B 404
09
AC9
SOFTWARE
ARG B:21 , ARG B:24 , LEU B:48 , ASN B:49
binding site for residue PEG B 405
10
AD1
SOFTWARE
ASN A:154 , HOH A:532 , TYR C:25 , TYR C:138 , GLN C:142 , HOH C:557
binding site for residue EDO C 401
11
AD2
SOFTWARE
ASN C:73 , THR C:74 , LEU C:77 , PRO C:78 , HOH C:534 , DA F:9 , HOH F:107
binding site for residue EDO C 402
12
AD3
SOFTWARE
LYS D:81 , GLU D:84
binding site for residue EDO D 401
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Exons
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SCOP Domains
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