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Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (158 KB)
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(1)
Title
:
DENGUE 3 NS5 PROTEIN WITH COMPOUND 27
Authors
:
J. Lescar, A. El Sahili
Date
:
25 Apr 16 (Deposition) - 06 Jul 16 (Release) - 24 Aug 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Rdrp, Dengue, Transferase-Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. P. Lim, C. G. Noble, C. C. Seh, T. S. Soh, A. El Sahili, G. K. Chan, J. Lescar, R. Arora, T. Benson, S. Nilar, U. Manjunatha, K. F. Wan, H. Dong, X. Xie, P. Y. Shi, F. Yokokawa
Potent Allosteric Dengue Virus Ns5 Polymerase Inhibitors: Mechanism Of Action And Resistance Profiling
Plos Pathog. V. 12 05737 2016
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Hetero Components
(6, 18)
Info
All Hetero Components
1a: 5-[5-(3-HYDROXYPROP-1-YN-1-YL)THIO... (6L2a)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
2h: 1,2-ETHANEDIOL (EDOh)
2i: 1,2-ETHANEDIOL (EDOi)
3a: MAGNESIUM ION (MGa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
4b: DI(HYDROXYETHYL)ETHER (PEGb)
4c: DI(HYDROXYETHYL)ETHER (PEGc)
4d: DI(HYDROXYETHYL)ETHER (PEGd)
5a: S-ADENOSYL-L-HOMOCYSTEINE (SAHa)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6L2
1
Ligand/Ion
5-[5-(3-HYDROXYPROP-1-YN-1-YL)THIOPHEN-2-YL]-2,4-DIMETHOXY-N-{[(1R,3R)-3-METHOXYCYCLOHEXYL]SULFONYL}BENZAMIDE
2
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
3
MG
1
Ligand/Ion
MAGNESIUM ION
4
PEG
4
Ligand/Ion
DI(HYDROXYETHYL)ETHER
5
SAH
1
Ligand/Ion
S-ADENOSYL-L-HOMOCYSTEINE
6
ZN
2
Ligand/Ion
ZINC ION
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:437 , HIS A:441 , CYS A:446 , CYS A:449
binding site for residue ZN A 1001
02
AC2
SOFTWARE
HIS A:712 , HIS A:714 , CYS A:728 , CYS A:847
binding site for residue ZN A 1002
03
AC3
SOFTWARE
TYR A:134 , CYS A:393 , THR A:394 , ARG A:438 , TYR A:482 , GLU A:486 , HOH A:1504
binding site for residue PEG A 1003
04
AC4
SOFTWARE
LEU A:511 , HIS A:512 , CYS A:709 , SER A:710 , HIS A:711 , ARG A:729 , ARG A:737 , TYR A:766 , THR A:794 , TRP A:795 , SER A:796 , HIS A:798 , HIS A:800 , GLN A:802 , TRP A:803 , HOH A:1336 , HOH A:1380 , HOH A:1540
binding site for residue 6L2 A 1004
05
AC5
SOFTWARE
ASP A:533 , ASP A:664 , HOH A:1218 , HOH A:1256 , HOH A:1325 , HOH A:1346
binding site for residue MG A 1005
06
AC6
SOFTWARE
TYR A:119 , ASP A:256 , LEU A:257 , GLY A:258 , LYS A:300 , LYS A:355 , GLU A:356 , ASP A:359 , THR A:360 , HOH A:1163
binding site for residue PEG A 1006
07
AC7
SOFTWARE
LYS A:14 , ASN A:18 , PRO A:152 , HOH A:1291
binding site for residue EDO A 1007
08
AC8
SOFTWARE
ARG A:57 , LYS A:61 , LEU A:209 , HOH A:1206 , HOH A:1436 , HOH A:1501
binding site for residue EDO A 1008
09
AC9
SOFTWARE
SER A:56 , GLY A:58 , GLY A:81 , CYS A:82 , GLY A:83 , GLY A:86 , TRP A:87 , THR A:104 , LYS A:105 , HIS A:110 , GLU A:111 , ASP A:131 , VAL A:132 , PHE A:133 , ASP A:146 , HOH A:1174 , HOH A:1183 , HOH A:1220
binding site for residue SAH A 1009
10
AD1
SOFTWARE
ARG A:499 , LYS A:656 , HOH A:1132 , HOH A:1248
binding site for residue EDO A 1010
11
AD2
SOFTWARE
GLU A:7 , GLU A:11 , LYS A:15 , ASN A:835 , HOH A:1441
binding site for residue EDO A 1011
12
AD3
SOFTWARE
GLN A:351 , ARG A:352 , LYS A:355 , EDO A:1013 , HOH A:1113 , HOH A:1187 , HOH A:1708
binding site for residue PEG A 1012
13
AD4
SOFTWARE
ASN A:69 , PRO A:298 , GLN A:351 , ARG A:581 , PEG A:1012 , HOH A:1608
binding site for residue EDO A 1013
14
AD5
SOFTWARE
LYS A:630 , TRP A:694
binding site for residue EDO A 1014
15
AD6
SOFTWARE
GLY A:6 , GLU A:7 , LYS A:719 , ASP A:720 , ILE A:874 , GLY A:875 , ASN A:876
binding site for residue PEG A 1015
16
AD7
SOFTWARE
PHE A:485 , GLY A:489 , ASN A:492 , GLU A:493 , VAL A:603 , HOH A:1102 , HOH A:1392
binding site for residue EDO A 1016
17
AD8
SOFTWARE
SER A:710 , HIS A:711 , HIS A:712 , HOH A:1131 , HOH A:1338
binding site for residue EDO A 1017
18
AD9
SOFTWARE
HIS A:714 , HOH A:1116 , HOH A:1494
binding site for residue EDO A 1018
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (164 KB)
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