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5JH7
Asym. Unit
Info
Asym.Unit (785 KB)
Biol.Unit 1 (767 KB)
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(1)
Title
:
TUBULIN-ERIBULIN COMPLEX
Authors
:
H. Doodhi, A. E. Prota, R. Rodriguez-Garcia, H. Xiao, D. W. Custar, K. Ba E. A. Katrukha, M. Hilbert, S. Hua, K. Jiang, I. Grigoriev, C. -P. H. Yan S. Band Horwitz, L. C. Kapitein, A. Akhmanova, M. O. Steinmetz
Date
:
20 Apr 16 (Deposition) - 29 Jun 16 (Release) - 27 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Cell Cycle, Cytoskeleton, Tubulin Fold, Microtubule
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Doodhi, A. E. Prota, R. Rodriguez-Garcia, H. Xiao, D. W. Custar, K. Bargsten, E. A. Katrukha, M. Hilbert, S. Hua, K. Jiang, I. Grigoriev C. P. Yang, D. Cox, S. B. Horwitz, L. C. Kapitein, A. Akhmanova, M. O. Steinmetz
Termination Of Protofilament Elongation By Eribulin Induces Lattice Defects That Promote Microtubule Catastrophes.
Curr. Biol. V. 26 1713 2016
[
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Hetero Components
(10, 22)
Info
All Hetero Components
01a: METHANESULFONIC ACID (03Sa)
02a: (1S,3S,6S,9S,12S,14R,16R,18S,20R,2... (6K9a)
02b: (1S,3S,6S,9S,12S,14R,16R,18S,20R,2... (6K9b)
03a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
04a: CALCIUM ION (CAa)
04b: CALCIUM ION (CAb)
04c: CALCIUM ION (CAc)
04d: CALCIUM ION (CAd)
04e: CALCIUM ION (CAe)
05a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
05b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
06a: GLYCEROL (GOLa)
06b: GLYCEROL (GOLb)
07a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
07b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
08a: IMIDAZOLE (IMDa)
08b: IMIDAZOLE (IMDb)
08c: IMIDAZOLE (IMDc)
09a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
10a: MAGNESIUM ION (MGa)
10b: MAGNESIUM ION (MGb)
10c: MAGNESIUM ION (MGc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
03S
1
Ligand/Ion
METHANESULFONIC ACID
2
6K9
2
Ligand/Ion
(1S,3S,6S,9S,12S,14R,16R,18S,20R,21R,22S,26R,29S,31R,32S,33R,35R,36S)-20-[(2S)-3-AMINO-2-HYDROXYPROPYL]-21-METHOXY-14-METHYL-8,15-DIMETHYLIDENE-2,19,30,34,37,39,40,41-OCTAOXANONACYCLO[24.9.2.1~3,32~.1~3,33~.1~6,9~.1~12,16~.0~18,22~.0~29,36~.0~31,35~]HENTETRACONTAN-24-ONE (NON-PREFERRED NAME)
3
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
4
CA
5
Ligand/Ion
CALCIUM ION
5
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
6
GOL
2
Ligand/Ion
GLYCEROL
7
GTP
2
Ligand/Ion
GUANOSINE-5'-TRIPHOSPHATE
8
IMD
3
Ligand/Ion
IMIDAZOLE
9
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
10
MG
3
Ligand/Ion
MAGNESIUM ION
[
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]
Sites
(22, 22)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:10 , GLN A:11 , ALA A:12 , GLN A:15 , ASP A:98 , ALA A:99 , ALA A:100 , ASN A:101 , SER A:140 , GLY A:143 , GLY A:144 , THR A:145 , GLY A:146 , VAL A:177 , GLU A:183 , ASN A:206 , TYR A:224 , ASN A:228 , ILE A:231 , MG A:502 , HOH A:641 , HOH A:647 , HOH A:669 , HOH A:680 , HOH A:705 , LYS B:254
binding site for residue GTP A 501
02
AC2
SOFTWARE
GTP A:501 , HOH A:629 , HOH A:669 , HOH A:680 , HOH A:705
binding site for residue MG A 502
03
AC3
SOFTWARE
ASP A:39 , THR A:41 , GLY A:44 , GLU A:55 , HOH A:604
binding site for residue CA A 503
04
AC4
SOFTWARE
PRO A:274 , VAL A:275
binding site for residue IMD A 504
05
AC5
SOFTWARE
ARG A:105 , GLY A:410 , GLU A:411 , HOH A:613 , MES B:505 , HOH B:631
binding site for residue GOL A 505
06
AC6
SOFTWARE
GLY B:10 , GLN B:11 , CYS B:12 , GLN B:15 , SER B:140 , GLY B:143 , GLY B:144 , THR B:145 , GLY B:146 , VAL B:177 , SER B:178 , GLU B:183 , ASN B:206 , TYR B:224 , ASN B:228 , 6K9 B:503 , 03S B:504 , HOH B:614 , HOH B:630 , HOH B:635 , HOH B:642 , HOH B:658
binding site for residue GDP B 501
07
AC7
SOFTWARE
GLU B:113 , HOH B:646
binding site for residue CA B 502
08
AC8
SOFTWARE
GLN B:11 , PRO B:175 , LYS B:176 , VAL B:177 , SER B:178 , ASP B:179 , PRO B:222 , THR B:223 , TYR B:224 , LEU B:227 , GDP B:501 , 03S B:504 , HOH B:601 , HOH B:611 , HOH B:617 , HOH B:673 , HOH B:683 , ALA C:247 , GLU C:254 , ASN C:329 , PHE C:351 , VAL C:353 , HOH C:606 , HOH C:733
binding site for residue 6K9 B 503
09
AC9
SOFTWARE
GLN B:11 , GLU B:71 , ASN B:101 , GDP B:501 , 6K9 B:503 , HOH B:642 , HOH C:606
binding site for residue 03S B 504
10
AD1
SOFTWARE
GOL A:505 , ARG B:158 , PRO B:162 , ASP B:163 , ARG B:164 , ASN B:197 , ASP B:199 , ARG B:253
binding site for residue MES B 505
11
AD2
SOFTWARE
ARG B:308 , ASN B:339 , TYR B:342 , IMD B:507
binding site for residue IMD B 506
12
AD3
SOFTWARE
PHE B:296 , ASP B:297 , SER B:298 , ARG B:308 , IMD B:506
binding site for residue IMD B 507
13
AD4
SOFTWARE
GLY C:10 , GLN C:11 , ALA C:12 , GLN C:15 , ASP C:98 , ALA C:99 , ALA C:100 , ASN C:101 , SER C:140 , GLY C:143 , GLY C:144 , THR C:145 , GLY C:146 , VAL C:177 , GLU C:183 , ASN C:206 , TYR C:224 , ASN C:228 , ILE C:231 , MG C:502 , HOH C:631 , HOH C:634 , HOH C:654 , HOH C:659 , HOH C:665 , HOH C:723 , HOH C:749 , LYS D:254
binding site for residue GTP C 501
14
AD5
SOFTWARE
GTP C:501 , HOH C:631 , HOH C:665 , HOH C:723 , HOH C:749
binding site for residue MG C 502
15
AD6
SOFTWARE
ASP C:39 , THR C:41 , GLY C:44 , GLU C:55 , HOH C:639
binding site for residue CA C 503
16
AD7
SOFTWARE
ASP B:120 , HOH B:691 , ASP C:218 , HOH C:796 , HOH C:797
binding site for residue CA C 504
17
AD8
SOFTWARE
CYS C:4 , GLN C:133 , SER C:165 , LEU C:167 , THR C:253 , GLN C:256
binding site for residue GOL C 505
18
AD9
SOFTWARE
GLY D:10 , GLN D:11 , CYS D:12 , GLN D:15 , SER D:140 , GLY D:143 , GLY D:144 , THR D:145 , GLY D:146 , VAL D:177 , SER D:178 , GLU D:183 , ASN D:206 , TYR D:224 , ASN D:228 , 6K9 D:502 , HOH D:617 , HOH D:619 , HOH D:620 , HOH D:636 , HOH D:670
binding site for residue GDP D 501
19
AE1
SOFTWARE
PRO D:175 , VAL D:177 , SER D:178 , ASP D:179 , PRO D:222 , THR D:223 , TYR D:224 , GDP D:501
binding site for residue 6K9 D 502
20
AE2
SOFTWARE
HOH A:737 , ASP E:44
binding site for residue CA E 200
21
AE3
SOFTWARE
LYS F:74 , ILE F:148 , LYS F:150 , GLN F:183 , LYS F:184 , TYR F:185 , LEU F:186 , LYS F:198 , ARG F:202 , ARG F:222 , HIS F:239 , THR F:241 , ASN F:242 , ASP F:318 , GLU F:331 , ASN F:333 , MG F:401 , HOH F:501 , HOH F:502 , HOH F:507
binding site for residue ACP F 400
22
AE4
SOFTWARE
LYS F:74 , GLU F:331 , ASN F:333 , ACP F:400 , HOH F:501
binding site for residue MG F 401
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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Info
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Atom Selection
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Chain F
Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
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