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5JF7
Asym. Unit
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Asym.Unit (77 KB)
Biol.Unit 1 (70 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TYPE 2 PDF FROM STREPTOCOCCUS AGALACTIAE IN COMPLEX WITH INHIBITOR SMP289
Authors
:
S. Fieulaine, C. Giglione, T. Meinnel, K. Hamiche
Date
:
19 Apr 16 (Deposition) - 30 Nov 16 (Release) - 30 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pdf, Type 2, Nme, N-Terminal Methionine Excision, Streptococcus Agalactiae, Inhibitor, Smp289, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Fieulaine, R. Alves De Sousa, L. Maigre, K. Hamiche, M. Alimi, J. M. Bolla, A. Taleb, A. Denis, J. M. Pages, I. Artaud, T. Meinnel, C. Giglione
A Unique Peptide Deformylase Platform To Rationally Design And Challenge Novel Active Compounds.
Sci Rep V. 6 35429 2016
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Hetero Components
(5, 13)
Info
All Hetero Components
1a: 2-(3-BENZYL-5-BROMO-1H-INDOL-1-YL)... (6JUa)
2a: ACETATE ION (ACTa)
3a: IMIDAZOLE (IMDa)
4a: CYSTEINESULFONIC ACID (OCSa)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
5c: ZINC ION (ZNc)
5d: ZINC ION (ZNd)
5e: ZINC ION (ZNe)
5f: ZINC ION (ZNf)
5g: ZINC ION (ZNg)
5h: ZINC ION (ZNh)
5i: ZINC ION (ZNi)
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No.
Name
Count
Type
Full Name
1
6JU
1
Ligand/Ion
2-(3-BENZYL-5-BROMO-1H-INDOL-1-YL)-N-HYDROXYACETAMIDE
2
ACT
1
Ligand/Ion
ACETATE ION
3
IMD
1
Ligand/Ion
IMIDAZOLE
4
OCS
1
Mod. Amino Acid
CYSTEINESULFONIC ACID
5
ZN
9
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:72 , GLN A:77 , GLU A:129 , GLY A:130 , OCS A:131 , LEU A:132 , HIS A:174 , GLU A:175 , HIS A:178 , ZN A:304
binding site for residue 6JU A 301
02
AC2
SOFTWARE
HIS A:145 , GLU A:158 , ASP A:177 , ARG A:187 , ZN A:308 , HOH A:415 , HOH A:487
binding site for residue ACT A 302
03
AC3
SOFTWARE
GLU A:32 , ARG A:147 , VAL A:148 , LYS A:163 , LEU A:164 , ZN A:312 , HOH A:405 , HOH A:555 , HOH A:608
binding site for residue IMD A 303
04
AC4
SOFTWARE
GLN A:77 , OCS A:131 , HIS A:174 , HIS A:178 , 6JU A:301
binding site for residue ZN A 304
05
AC5
SOFTWARE
HIS A:55 , GLU A:198 , HOH A:500 , HOH A:511 , HOH A:567
binding site for residue ZN A 305
06
AC6
SOFTWARE
HIS A:118 , ASP A:154 , HOH A:404 , HOH A:554 , HOH A:564 , HOH A:572 , HOH A:577
binding site for residue ZN A 306
07
AC7
SOFTWARE
ASP A:94 , GLU A:190 , HOH A:416 , HOH A:422 , HOH A:566
binding site for residue ZN A 307
08
AC8
SOFTWARE
HIS A:145 , GLU A:158 , ACT A:302 , HOH A:561
binding site for residue ZN A 308
09
AC9
SOFTWARE
HIS A:12 , ASP A:18 , HOH A:414 , HOH A:418 , HOH A:539 , HOH A:574
binding site for residue ZN A 309
10
AD1
SOFTWARE
GLU A:43 , GLU A:47 , HOH A:507 , HOH A:568
binding site for residue ZN A 310
11
AD2
SOFTWARE
GLU A:102 , GLU A:151 , HOH A:556 , HOH A:583
binding site for residue ZN A 311
12
AD3
SOFTWARE
GLU A:32 , IMD A:303 , HOH A:405 , HOH A:602
binding site for residue ZN A 312
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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Exons
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SCOP Domains
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Chain A
Asymmetric Unit 1
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