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5J6S
Biol. Unit 1
Info
Asym.Unit (319 KB)
Biol.Unit 1 (160 KB)
Biol.Unit 2 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF ENDOPLASMIC RETICULUM AMINOPEPTIDASE 2 (ERAP2) IN COMPLEX WITH A HYDROXAMIC DERIVATIVE LIGAND
Authors
:
E. Saridakis, P. Giastas, A. Mpakali, R. Deprez-Poulain, E. Stratikos
Date
:
05 Apr 16 (Deposition) - 15 Mar 17 (Release) - 05 Apr 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Endoplasmic Reticulum, Aminopeptidase, Hydrolase, Zn Binding Metallopeptidase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. Mpakali, P. Giastas, R. Deprez-Poulain, A. Papakyriakou, D. Koumantou, R. Gealageas, S. Tsoukalidou, D. Vourloumis, I. M. Mavridis, E. Stratikos, E. Saridakis
Crystal Structures Of Erap2 Complexed With Inhibitors Revea Pharmacophore Requirements For Optimizing Inhibitor Potency
Acs Med Chem Lett V. 8 333 2017
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Hetero Components
(3, 14)
Info
All Hetero Components
1a: (2S)-N~1~-BENZYL-2-[(4-FLUOROPHENY... (6GAa)
1b: (2S)-N~1~-BENZYL-2-[(4-FLUOROPHENY... (6GAb)
2a: BETA-D-MANNOSE (BMAa)
2b: BETA-D-MANNOSE (BMAb)
2c: BETA-D-MANNOSE (BMAc)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
4k: N-ACETYL-D-GLUCOSAMINE (NAGk)
4l: N-ACETYL-D-GLUCOSAMINE (NAGl)
4m: N-ACETYL-D-GLUCOSAMINE (NAGm)
4n: N-ACETYL-D-GLUCOSAMINE (NAGn)
4o: N-ACETYL-D-GLUCOSAMINE (NAGo)
4p: N-ACETYL-D-GLUCOSAMINE (NAGp)
4q: N-ACETYL-D-GLUCOSAMINE (NAGq)
4r: N-ACETYL-D-GLUCOSAMINE (NAGr)
4s: N-ACETYL-D-GLUCOSAMINE (NAGs)
4t: N-ACETYL-D-GLUCOSAMINE (NAGt)
4u: N-ACETYL-D-GLUCOSAMINE (NAGu)
5a: ZINC ION (ZNa)
5b: ZINC ION (ZNb)
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Label:
No.
Name
Count
Type
Full Name
1
6GA
1
Ligand/Ion
(2S)-N~1~-BENZYL-2-[(4-FLUOROPHENYL)METHYL]-N~3~-HYDROXYPROPANEDIAMIDE
2
BMA
1
Ligand/Ion
BETA-D-MANNOSE
3
MAN
-1
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
12
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: AC9 (SOFTWARE)
08: AD1 (SOFTWARE)
09: AD2 (SOFTWARE)
10: AD3 (SOFTWARE)
11: AD4 (SOFTWARE)
12: AD5 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:370 , HIS A:374 , GLU A:393 , 6GA A:1015
binding site for residue ZN A 1001
02
AC2
SOFTWARE
ASP A:198 , GLU A:200 , PRO A:333 , GLY A:334 , ALA A:335 , MET A:336 , GLU A:337 , HIS A:370 , GLU A:371 , HIS A:374 , GLU A:393 , PHE A:450 , TYR A:455 , TYR A:892 , ZN A:1001
binding site for residue 6GA A 1015
03
AC5
SOFTWARE
HIS A:83 , ASN A:85 , GLU A:227 , LEU A:248 , HOH A:1102 , ASP B:291
binding site for Poly-Saccharide residues NAG A 1002 through NAG A 1003 bound to ASN A 85
04
AC6
SOFTWARE
ASN A:103 , HOH A:1101
binding site for Mono-Saccharide NAG A 1010 bound to ASN A 103
05
AC7
SOFTWARE
ASN A:119 , ASP A:167
binding site for Mono-Saccharide NAG A 1011 bound to ASN A 119
06
AC8
SOFTWARE
HIS A:77 , ASN A:219 , THR A:255 , VAL A:257 , LYS A:258 , TYR A:487 , HOH A:1112 , HOH A:1119
binding site for Poly-Saccharide residues NAG A 1004 through BMA A 1006 bound to ASN A 219
07
AC9
SOFTWARE
ASN A:294 , ASP A:352 , HOH A:1114
binding site for Mono-Saccharide NAG A 1013 bound to ASN A 294
08
AD1
SOFTWARE
ASN A:405 , LYS A:466
binding site for Poly-Saccharide residues NAG A 1007 through NAG A 1008 bound to ASN A 405
09
AD2
SOFTWARE
ASN A:431 , LYS A:545
binding site for Mono-Saccharide NAG A 1009 bound to ASN A 431
10
AD3
SOFTWARE
ASN A:650
binding site for Mono-Saccharide NAG A 1014 bound to ASN A 650
11
AD4
SOFTWARE
ASN A:714
binding site for Mono-Saccharide NAG A 1012 bound to ASN A 714
12
AD5
SOFTWARE
HIS A:272 , SER A:273 , PRO A:290 , ASP A:291 , ARG A:293 , HOH A:1115 , HIS B:83 , PRO B:84 , ASN B:85 , GLU B:227 , GLY B:246 , LEU B:248
binding site for Poly-Saccharide residues NAG B 1002 through MAN B 1006 bound to ASN B 85
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Chain A
Asymmetric Unit 1
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Asym.Unit (319 KB)
Header - Asym.Unit
Biol.Unit 1 (160 KB)
Header - Biol.Unit 1
Biol.Unit 2 (155 KB)
Header - Biol.Unit 2
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