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5J5F
Asym. Unit
Info
Asym.Unit (396 KB)
Biol.Unit 1 (197 KB)
Biol.Unit 2 (197 KB)
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(1)
Title
:
X-RAY CRYSTAL STRUCTURE OF ACETYLCHOLINE BINDING PROTEIN (ACHBP) IN COMPLEX WITH N4,N4-BIS[(PYRIDIN-2-YL)METHYL]-6-(THIOPHEN-3-YL) PYRIMIDINE-2,4-DIAMINE
Authors
:
K. Kaczanowska, G. A. Camacho Hernandez, M. Harel, P. Taylor
Date
:
02 Apr 16 (Deposition) - 08 Mar 17 (Release) - 22 Mar 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.04
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E (1x)
Biol. Unit 2: F,G,H,I,J (1x)
Keywords
:
Acetylcholine-Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Kaczanowska, G. A. Camacho Hernandez, L. Bendiks, L. Kohs, J. M. Cornejo-Bravo, M. Harel, M. G. Finn, P. Taylor
Substituted 2-Aminopyrimidines Selective For Alpha 7-Nicotinic Acetylcholine Receptor Activation And Association With Acetylcholine Binding Proteins.
J. Am. Chem. Soc. V. 139 3676 2017
[
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Hetero Components
(5, 34)
Info
All Hetero Components
1a: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHa)
1b: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHb)
1c: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHc)
1d: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHd)
1e: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHe)
1f: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHf)
1g: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHg)
1h: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHh)
1i: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHi)
1j: N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL... (6GHj)
2a: DIMETHYL SULFOXIDE (DMSa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
4i: N-ACETYL-D-GLUCOSAMINE (NAGi)
4j: N-ACETYL-D-GLUCOSAMINE (NAGj)
5a: PHOSPHATE ION (PO4a)
5b: PHOSPHATE ION (PO4b)
5c: PHOSPHATE ION (PO4c)
5d: PHOSPHATE ION (PO4d)
5e: PHOSPHATE ION (PO4e)
5f: PHOSPHATE ION (PO4f)
5g: PHOSPHATE ION (PO4g)
5h: PHOSPHATE ION (PO4h)
5i: PHOSPHATE ION (PO4i)
5j: PHOSPHATE ION (PO4j)
5k: PHOSPHATE ION (PO4k)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6GH
10
Ligand/Ion
N~4~,N~4~-BIS[(PYRIDIN-2-YL)METHYL]-6-(THIOPHEN-3-YL)PYRIMIDINE-2,4-DIAMINE
2
DMS
1
Ligand/Ion
DIMETHYL SULFOXIDE
3
GOL
2
Ligand/Ion
GLYCEROL
4
NAG
10
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
5
PO4
11
Ligand/Ion
PHOSPHATE ION
[
close Hetero Component info
]
Sites
(34, 34)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
16: AD7 (SOFTWARE)
17: AD8 (SOFTWARE)
18: AD9 (SOFTWARE)
19: AE1 (SOFTWARE)
20: AE2 (SOFTWARE)
21: AE3 (SOFTWARE)
22: AE4 (SOFTWARE)
23: AE5 (SOFTWARE)
24: AE6 (SOFTWARE)
25: AE7 (SOFTWARE)
26: AE8 (SOFTWARE)
27: AE9 (SOFTWARE)
28: AF1 (SOFTWARE)
29: AF2 (SOFTWARE)
30: AF3 (SOFTWARE)
31: AF4 (SOFTWARE)
32: AF5 (SOFTWARE)
33: AF6 (SOFTWARE)
34: AF7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:3 , VAL A:74 , SER A:75 , ASP E:17 , VAL E:18 , ILE E:19 , HIS E:145 , HOH E:468
binding site for residue PO4 A 301
02
AC2
SOFTWARE
TRP A:143 , TYR A:185 , CYS A:187 , CYS A:188 , TYR A:192 , GLN B:55 , THR B:57 , ARG B:104 , LEU B:112 , MET B:114 , TYR B:164
binding site for residue 6GH A 303
03
AC3
SOFTWARE
ASP A:17 , VAL A:18 , ILE A:19 , HIS A:145 , ARG B:3 , VAL B:74 , SER B:75
binding site for residue PO4 B 301
04
AC4
SOFTWARE
ASP B:17 , VAL B:18 , ILE B:19 , HIS B:145 , ARG C:3 , VAL C:74 , SER C:75
binding site for residue PO4 B 302
05
AC5
SOFTWARE
ASP B:-7 , LYS B:-5 , ASP B:-4 , HIS B:69 , NAG F:303 , ASP H:160 , SER H:162
binding site for residue PO4 B 303
06
AC6
SOFTWARE
TRP B:143 , TYR B:185 , CYS B:187 , CYS B:188 , TYR B:192 , GLN C:55 , THR C:57 , ARG C:104 , LEU C:112 , MET C:114 , TYR C:164
binding site for residue 6GH B 305
07
AC7
SOFTWARE
ASP C:17 , VAL C:18 , ILE C:19 , HIS C:145 , ARG D:3 , VAL D:74 , SER D:75
binding site for residue PO4 C 301
08
AC8
SOFTWARE
TYR C:89 , TRP C:143 , THR C:144 , TYR C:185 , CYS C:187 , CYS C:188 , TYR C:192 , GLN D:55 , THR D:57 , LEU D:112 , MET D:114 , TYR D:164
binding site for residue 6GH C 303
09
AC9
SOFTWARE
ASP D:17 , VAL D:18 , ILE D:19 , HIS D:145 , ARG E:3 , VAL E:74 , SER E:75
binding site for residue PO4 D 301
10
AD1
SOFTWARE
TRP D:143 , TYR D:185 , CYS D:187 , CYS D:188 , TYR D:192 , GLN E:55 , THR E:57 , LEU E:112 , MET E:114 , TYR E:164
binding site for residue 6GH D 303
11
AD2
SOFTWARE
GLN A:55 , THR A:57 , LEU A:112 , MET A:114 , TYR A:164 , TRP E:143 , CYS E:187 , CYS E:188 , TYR E:192
binding site for residue 6GH E 302
12
AD3
SOFTWARE
ARG F:3 , VAL F:74 , SER F:75 , ASP J:17 , VAL J:18 , ILE J:19 , HIS J:145
binding site for residue PO4 F 301
13
AD4
SOFTWARE
ASP F:17 , VAL F:18 , ILE F:19 , HIS F:145 , ARG G:3 , VAL G:74 , SER G:75
binding site for residue PO4 F 302
14
AD5
SOFTWARE
GLN F:54 , LEU F:86 , PRO F:95 , GLN F:119 , HOH F:407 , HOH F:423
binding site for residue GOL F 304
15
AD6
SOFTWARE
TRP F:143 , TYR F:185 , CYS F:187 , CYS F:188 , TYR F:192 , GLN G:55 , THR G:57 , LEU G:112 , MET G:114 , TYR G:164
binding site for residue 6GH F 305
16
AD7
SOFTWARE
TYR G:89 , TRP G:143 , TYR G:185 , CYS G:187 , CYS G:188 , TYR G:192 , GLN H:55 , THR H:56 , THR H:57 , LEU H:112 , MET H:114 , TYR H:164
binding site for residue 6GH G 302
17
AD8
SOFTWARE
ASP G:17 , VAL G:18 , ILE G:19 , HIS G:145 , ARG H:3 , VAL H:74 , SER H:75
binding site for residue PO4 H 301
18
AD9
SOFTWARE
PRO H:16 , LEU H:81 , TRP H:82 , VAL H:83 , ASP H:85 , HOH H:403 , HOH H:442
binding site for residue GOL H 303
19
AE1
SOFTWARE
TRP H:143 , TYR H:185 , CYS H:187 , CYS H:188 , TYR H:192 , GLN I:55 , THR I:57 , ARG I:104 , LEU I:112 , MET I:114 , TYR I:164
binding site for residue 6GH H 304
20
AE2
SOFTWARE
ASP E:5 , ASN H:9 , ASN H:66 , SER H:70
binding site for residue DMS H 305
21
AE3
SOFTWARE
ASP H:17 , VAL H:18 , ILE H:19 , HIS H:145 , ARG I:3 , VAL I:74 , SER I:75
binding site for residue PO4 I 301
22
AE4
SOFTWARE
ASP I:17 , VAL I:18 , ILE I:19 , HIS I:145 , ARG J:3 , VAL J:74 , SER J:75
binding site for residue PO4 I 302
23
AE5
SOFTWARE
TRP I:143 , TYR I:185 , CYS I:187 , CYS I:188 , TYR I:192 , GLN J:55 , THR J:57 , ARG J:104 , LEU J:112 , MET J:114 , TYR J:164
binding site for residue 6GH I 304
24
AE6
SOFTWARE
GLN F:55 , THR F:57 , LEU F:112 , MET F:114 , TYR F:164 , TRP J:143 , TYR J:185 , CYS J:187 , CYS J:188 , TYR J:192
binding site for residue 6GH J 302
25
AE7
SOFTWARE
ASN A:66 , ASP G:-4
binding site for Mono-Saccharide NAG A 302 bound to ASN A 66
26
AE8
SOFTWARE
ASN B:66 , SER B:68 , HIS B:69 , LEU H:174 , ASP H:175 , ASN H:200
binding site for Mono-Saccharide NAG B 304 bound to ASN B 66
27
AE9
SOFTWARE
ASN C:66 , SER C:68 , HIS C:69
binding site for Mono-Saccharide NAG C 302 bound to ASN C 66
28
AF1
SOFTWARE
ASN D:66 , SER D:68 , HIS D:69
binding site for Mono-Saccharide NAG D 302 bound to ASN D 66
29
AF2
SOFTWARE
ASN E:66 , SER E:68 , HIS E:69
binding site for Mono-Saccharide NAG E 301 bound to ASN E 66
30
AF3
SOFTWARE
PO4 B:303 , ASN F:66 , SER F:68 , HIS F:69
binding site for Mono-Saccharide NAG F 303 bound to ASN F 66
31
AF4
SOFTWARE
HOH A:404 , ASN G:66 , SER G:68
binding site for Mono-Saccharide NAG G 301 bound to ASN G 66
32
AF5
SOFTWARE
ASP E:-4 , ASN H:66 , SER H:68 , HIS H:69
binding site for Mono-Saccharide NAG H 302 bound to ASN H 66
33
AF6
SOFTWARE
ASN I:66 , SER I:68
binding site for Mono-Saccharide NAG I 303 bound to ASN I 66
34
AF7
SOFTWARE
ASP C:-4 , ASN J:66 , SER J:68
binding site for Mono-Saccharide NAG J 301 bound to ASN J 66
[
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SAPs(SNPs)/Variants
(0, 0)
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Pfam Domains
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