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5J58
Asym. Unit
Info
Asym.Unit (185 KB)
Biol.Unit 1 (91 KB)
Biol.Unit 2 (93 KB)
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(1)
Title
:
TRYPANOSOMA BRUCEI METHIONYL-TRNA SYNTHETASE IN COMPLEX WITH INHIBITOR (CHEM 1856)
Authors
:
X. Barros-Alvarez, W. G. J. Hol
Date
:
01 Apr 16 (Deposition) - 25 Jan 17 (Release) - 25 Jan 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Synthetase, Ligase, Methionine, Inhibitor, Ligase-Ligase Inhibitor Complex
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Gene Ontology, PubMed, Web (Google)
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Reference
:
W. Huang, Z. Zhang, X. Barros-Alvarez, C. Y. Koh, R. M. Ranade, J. R. Gillespie, S. A. Creason, S. Shibata, C. L. Verlinde, W. G. Hol, F. S. Buckner, E. Fan
Structure-Guided Design Of Novel Trypanosoma Brucei Methionyl-Trna Synthetase Inhibitors.
Eur J Med Chem V. 124 1081 2016
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Hetero Components
(4, 8)
Info
All Hetero Components
1a: DIMETHYL SULFOXIDE (DMSa)
1b: DIMETHYL SULFOXIDE (DMSb)
1c: DIMETHYL SULFOXIDE (DMSc)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
3a: METHIONINE (METa)
4a: (3S)-1-(5-CHLORO-1H-IMIDAZO[4,5-B]... (N56a)
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No.
Name
Count
Type
Full Name
1
DMS
3
Ligand/Ion
DIMETHYL SULFOXIDE
2
GOL
3
Ligand/Ion
GLYCEROL
3
MET
1
Mod. Amino Acid
METHIONINE
4
N56
1
Ligand/Ion
(3S)-1-(5-CHLORO-1H-IMIDAZO[4,5-B]PYRIDIN-2-YL)-N-[(3,5-DICHLOROPHENYL)METHYL]PIPERIDIN-3-AMINE
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
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Residues
Description
1
AC1
SOFTWARE
ILE A:248 , TYR A:250 , ASP A:287 , TRP A:474 , ALA A:477 , LEU A:478 , TYR A:481 , ILE A:519 , HIS A:523 , THR A:549 , LYS A:550 , HOH A:950
binding site for residue MET A 801
2
AC2
SOFTWARE
ARG A:583 , ARG A:601
binding site for residue GOL A 802
3
AC3
SOFTWARE
TYR A:261 , SER A:585 , GLY A:586 , PHE A:587 , ILE A:661 , GLN A:662
binding site for residue GOL A 803
4
AC4
SOFTWARE
GLU A:435 , DMS A:805
binding site for residue DMS A 804
5
AC5
SOFTWARE
GLU A:392 , LYS A:517 , ASP A:518 , LEU A:520 , LYS A:521 , DMS A:804
binding site for residue DMS A 805
6
AC6
SOFTWARE
ARG B:583 , ARG B:601
binding site for residue GOL B 801
7
AC7
SOFTWARE
GLU B:320 , TYR B:324 , ILE B:326 , HOH B:1043
binding site for residue DMS B 802
8
AC8
SOFTWARE
TYR B:250 , ASP B:287 , GLY B:290 , VAL B:471 , VAL B:473 , TRP B:474 , ASP B:476 , HOH B:921 , HOH B:978
binding site for residue N56 B 803
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SAPs(SNPs)/Variants
(0, 0)
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SCOP Domains
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Asymmetric Unit 1
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Asym.Unit (185 KB)
Header - Asym.Unit
Biol.Unit 1 (91 KB)
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