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5J4X
Biol. Unit 2
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Asym.Unit (218 KB)
Biol.Unit 1 (108 KB)
Biol.Unit 2 (105 KB)
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(1)
Title
:
STRUCTURE OF TETRAMERIC JACALIN COMPLEXED WITH GAL BETA-(1,3) GAL-BETA-OME
Authors
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Date
:
01 Apr 16 (Deposition) - 08 Feb 17 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Plant Lectins And Sugar Binding Protein, Galactose Specific Lectin, Beta-Prism I Fold, Post Translational Proteolysis, T-Antigen Binding Protein, Reducing And Non-Reducing Sugars, Sugar Binding Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Distortion Of The Ligand Molecule As A Strategy For Modulating Binding Affinity: Further Studies Involving Complexes Of Jacalin With Beta-Substituted Disaccharides.
Iubmb Life V. 69 72 2017
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
2a: BETA-D-GALACTOSE (GALa)
3a: ISOPROPYL ALCOHOL (IPAa)
4a: METHYL-BETA-GALACTOSE (MBGa)
View:
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Label:
No.
Name
Count
Type
Full Name
1
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
2
GAL
-1
Ligand/Ion
BETA-D-GALACTOSE
3
IPA
-1
Ligand/Ion
ISOPROPYL ALCOHOL
4
MBG
-1
Ligand/Ion
METHYL-BETA-GALACTOSE
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AD1 (SOFTWARE)
07: AD2 (SOFTWARE)
08: AD3 (SOFTWARE)
09: AD4 (SOFTWARE)
10: AD5 (SOFTWARE)
11: AD6 (SOFTWARE)
12: AD7 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:35 , HOH A:366 , ASP E:5
binding site for residue EDO A 201
02
AC2
SOFTWARE
TYR A:19 , LYS A:21 , HOH A:303 , HOH A:316 , LYS E:91 , THR E:92
binding site for residue EDO A 202
03
AC3
SOFTWARE
ASN A:110 , GLY A:111 , LEU A:112 , SER F:4
binding site for residue EDO A 203
04
AC4
SOFTWARE
ALA A:8 , PHE A:9 , THR A:10 , HOH A:370 , ALA E:8 , HOH E:317
binding site for residue IPA A 204
05
AC5
SOFTWARE
ASP C:5 , GLY C:7 , HOH C:312 , ASN G:35
binding site for residue EDO C 201
06
AD1
SOFTWARE
LYS C:55 , HOH C:345 , HOH C:367 , GLU E:14 , LYS E:55
binding site for residue EDO E 201
07
AD2
SOFTWARE
ASN E:16 , LEU E:17 , SER E:18 , ASP E:27 , ASN E:43 , HOH E:372
binding site for residue EDO E 202
08
AD3
SOFTWARE
SER F:7 , GLN F:8 , THR F:9 , ASN G:110
binding site for residue EDO F 101
09
AD4
SOFTWARE
TYR C:78 , HOH C:308 , HOH C:329 , PHE G:47 , TYR G:78 , HOH G:347 , HOH G:359
binding site for residue EDO G 201
10
AD5
SOFTWARE
PHE G:4 , ASP G:5 , ASP G:6 , GLN G:42 , HIS G:44 , HOH G:341
binding site for residue EDO G 202
11
AD6
SOFTWARE
ALA C:8 , ALA G:8 , THR G:10 , HOH G:381
binding site for residue EDO G 203
12
AD7
SOFTWARE
TYR G:126 , PRO H:14 , ALA H:17 , LYS H:18 , HOH H:202 , HOH H:206
binding site for residue EDO H 101
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Pfam Domains
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (218 KB)
Header - Asym.Unit
Biol.Unit 1 (108 KB)
Header - Biol.Unit 1
Biol.Unit 2 (105 KB)
Header - Biol.Unit 2
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