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5J4T
Biol. Unit 1
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Asym.Unit (207 KB)
Biol.Unit 1 (102 KB)
Biol.Unit 2 (101 KB)
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(1)
Title
:
STRUCTURE OF TETRAMERIC JACALIN COMPLEXED WITH GLCNAC BETA-(1,3) GAL-BETA-OME
Authors
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Date
:
01 Apr 16 (Deposition) - 08 Feb 17 (Release) - 08 Feb 17 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.94
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Plant Lectins, Sugar Binding Protein, Galactose Specific Lectin, Beta-Prism I Fold, Post Translational Proteolysis, T-Antigen Binding Protein, Reducing And Non-Reducing Sugars
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Reference
:
K. V. Abhinav, K. Sharma, A. Surolia, M. Vijayan
Distortion Of The Ligand Molecule As A Strategy For Modulating Binding Affinity: Further Studies Involving Complexes Of Jacalin With Beta-Substituted Disaccharides.
Iubmb Life V. 69 72 2017
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Hetero Components
(3, 5)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
2a: METHYL-BETA-GALACTOSE (MBGa)
2b: METHYL-BETA-GALACTOSE (MBGb)
3a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4a: DI(HYDROXYETHYL)ETHER (PEGa)
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No.
Name
Count
Type
Full Name
1
EDO
3
Ligand/Ion
1,2-ETHANEDIOL
2
MBG
1
Ligand/Ion
METHYL-BETA-GALACTOSE
3
NAG
1
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
4
PEG
-1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC7 (SOFTWARE)
6: AD2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:53 , HOH A:304
binding site for residue EDO A 201
2
AC2
SOFTWARE
ASN A:110 , GLY A:111 , LEU A:112 , GLN F:3 , SER F:4
binding site for residue EDO A 202
3
AC3
SOFTWARE
ASP A:59 , SER A:62
binding site for residue EDO A 203
4
AC4
SOFTWARE
TYR C:39 , VAL C:40 , SER E:18 , ASP E:27 , LYS E:45
binding site for residue EDO E 201
5
AC7
SOFTWARE
TYR C:78 , VAL C:79 , GLY G:1 , TYR G:78 , GLY G:121 , TYR G:122 , TRP G:123 , ASP G:125 , HOH G:309
binding site for residue MBG G 201
6
AD2
SOFTWARE
GLY A:1 , PHE A:47 , TYR A:78 , GLY A:121 , TYR A:122 , TRP A:123 , ASP A:125 , HOH A:305 , HOH A:306 , HOH A:308 , HOH A:338
binding site for Poly-Saccharide residues NAG A 204 through MBG A 205
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Asymmetric Unit 1
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Asym.Unit (207 KB)
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