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5J42
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (93 KB)
Biol.Unit 2 (92 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF M2HTDP2-CAT IN COMPLEX WITH A SMALL MOLECULE INHIBITOR
Authors
:
P. Hornyak, L. H. Pearl, K. W. Caldecott, A. W. Oliver
Date
:
31 Mar 16 (Deposition) - 04 May 16 (Release) - 06 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tyrosyl Dna Phosphodiesterase 2 Catalytic Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Hornyak, T. Askwith, S. Walker, E. Komulainen, M. Paradowski, L. E. Pennicott, E. J. Bartlett, N. C. Brissett, A. Raoof, M. Watson, A. M. Jordan, D. J. Ogilvie, S. E. Ward, J. R. Atack, L. H. Pearl, K. W. Caldecott, A. W. Oliver
Mode Of Action Of Dna-Competitive Small Molecule Inhibitors Of Tyrosyl Dna Phosphodiesterase 2.
Biochem. J. V. 473 1869 2016
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Hetero Components
(5, 14)
Info
All Hetero Components
1a: 10-(4-HYDROXYPHENYL)-2,4-DIOXO-2,3... (6FVa)
1b: 10-(4-HYDROXYPHENYL)-2,4-DIOXO-2,3... (6FVb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
5a: L(+)-TARTARIC ACID (TLAa)
5b: L(+)-TARTARIC ACID (TLAb)
5c: L(+)-TARTARIC ACID (TLAc)
5d: L(+)-TARTARIC ACID (TLAd)
5e: L(+)-TARTARIC ACID (TLAe)
5f: L(+)-TARTARIC ACID (TLAf)
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Label:
No.
Name
Count
Type
Full Name
1
6FV
2
Ligand/Ion
10-(4-HYDROXYPHENYL)-2,4-DIOXO-2,3,4,10-TETRAHYDROPYRIMIDO[4,5-B]QUINOLINE-8-CARBONITRILE
2
EDO
2
Ligand/Ion
1,2-ETHANEDIOL
3
GOL
2
Ligand/Ion
GLYCEROL
4
MN
2
Ligand/Ion
MANGANESE (II) ION
5
TLA
6
Ligand/Ion
L(+)-TARTARIC ACID
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:240 , ARG A:241 , ARG A:276 , CYS A:321 , LEU A:323 , TLA A:402 , HOH A:528 , HOH A:539 , HOH A:541 , HOH A:582 , ILE B:317 , PRO B:318 , 6FV B:401 , TLA B:405
binding site for residue 6FV A 401
02
AC2
SOFTWARE
THR A:240 , ARG A:241 , GLY A:242 , 6FV A:401 , HOH A:521 , HOH A:534 , HOH A:716 , HOH A:720 , ALA B:319 , ALA B:320 , HOH B:591
binding site for residue TLA A 402
03
AC3
SOFTWARE
ASP A:132 , LEU A:134 , GLU A:162 , ARG A:216 , HIS A:236 , SER A:239 , MN A:406 , HOH A:528 , HOH A:530 , HOH A:536 , HOH A:601 , HOH A:616 , HOH A:625 , HOH A:642 , ARG B:316
binding site for residue TLA A 403
04
AC4
SOFTWARE
LYS A:252 , LEU A:255 , GLY A:256 , GLN A:259 , GLY A:285 , PRO A:287 , HOH A:501 , HOH A:502 , HOH A:503 , HOH A:666
binding site for residue GOL A 404
05
AC5
SOFTWARE
ARG A:276 , ASP A:277 , LEU A:323 , ARG A:327 , HOH A:506 , HOH A:533 , HOH A:604 , HOH A:615
binding site for residue EDO A 405
06
AC6
SOFTWARE
ASP A:132 , GLU A:162 , TLA A:403 , HOH A:530 , HOH A:613
binding site for residue MN A 406
07
AC7
SOFTWARE
ILE A:317 , PRO A:318 , 6FV A:401 , THR B:240 , ARG B:241 , ARG B:276 , ARG B:278 , TRP B:307 , CYS B:321 , TLA B:402 , TLA B:405 , HOH B:510 , HOH B:533 , HOH B:583
binding site for residue 6FV B 401
08
AC8
SOFTWARE
PRO A:318 , ALA A:319 , ALA A:320 , HOH A:566 , THR B:240 , ARG B:241 , GLY B:242 , 6FV B:401 , HOH B:505 , HOH B:506 , HOH B:512 , HOH B:632 , HOH B:725
binding site for residue TLA B 402
09
AC9
SOFTWARE
ARG A:316 , ASP B:132 , LEU B:134 , GLU B:162 , ARG B:216 , HIS B:236 , SER B:239 , MN B:408 , HOH B:510 , HOH B:547 , HOH B:559 , HOH B:594 , HOH B:606 , HOH B:647 , HOH B:659
binding site for residue TLA B 403
10
AD1
SOFTWARE
ARG B:276 , ASP B:277 , TYR B:305 , LEU B:323 , HOH B:504 , HOH B:517 , HOH B:602 , HOH B:617 , HOH B:640 , HOH B:644
binding site for residue TLA B 404
11
AD2
SOFTWARE
ARG A:241 , ALA A:319 , 6FV A:401 , ARG B:241 , ALA B:319 , 6FV B:401 , HOH B:501 , HOH B:512 , HOH B:632 , HOH B:639
binding site for residue TLA B 405
12
AD3
SOFTWARE
PHE B:209 , PRO B:210 , ASN B:211 , GLU B:246 , ARG B:249 , THR B:253 , HOH B:624
binding site for residue GOL B 406
13
AD4
SOFTWARE
LYS B:301 , GLN B:304 , TYR B:305 , ASP B:308 , LEU B:344 , TRP B:360 , HOH B:609
binding site for residue EDO B 407
14
AD5
SOFTWARE
ARG A:316 , ASP B:132 , GLU B:162 , TLA B:403 , HOH B:553 , HOH B:647
binding site for residue MN B 408
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Asymmetric Unit 1
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Asym.Unit (190 KB)
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