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5J3Z
Biol. Unit 2
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Asym.Unit (188 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (91 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF M2HTDP2-CAT IN COMPLEX WITH A SMALL MOLECULE INHIBITOR
Authors
:
P. Hornyak, L. H. Pearl, K. W. Caldecott, A. W. Oliver
Date
:
31 Mar 16 (Deposition) - 04 May 16 (Release) - 06 Jul 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Tyrosyl Dna Phosphodiesterase 2 Catalytic Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
P. Hornyak, T. Askwith, S. Walker, E. Komulainen, M. Paradowski, L. E. Pennicott, E. J. Bartlett, N. C. Brissett, A. Raoof, M. Watson, A. M. Jordan, D. J. Ogilvie, S. E. Ward, J. R. Atack, L. H. Pearl, K. W. Caldecott, A. W. Oliver
Mode Of Action Of Dna-Competitive Small Molecule Inhibitors Of Tyrosyl Dna Phosphodiesterase 2.
Biochem. J. V. 473 1869 2016
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: 2,4-DIOXO-10-[3-(1H-TETRAZOL-5-YL)... (6FQa)
1b: 2,4-DIOXO-10-[3-(1H-TETRAZOL-5-YL)... (6FQb)
2a: ACETATE ION (ACTa)
2b: ACETATE ION (ACTb)
2c: ACETATE ION (ACTc)
2d: ACETATE ION (ACTd)
2e: ACETATE ION (ACTe)
2f: ACETATE ION (ACTf)
3a: 1,2-ETHANEDIOL (EDOa)
3b: 1,2-ETHANEDIOL (EDOb)
3c: 1,2-ETHANEDIOL (EDOc)
3d: 1,2-ETHANEDIOL (EDOd)
3e: 1,2-ETHANEDIOL (EDOe)
3f: 1,2-ETHANEDIOL (EDOf)
3g: 1,2-ETHANEDIOL (EDOg)
3h: 1,2-ETHANEDIOL (EDOh)
3i: 1,2-ETHANEDIOL (EDOi)
3j: 1,2-ETHANEDIOL (EDOj)
3k: 1,2-ETHANEDIOL (EDOk)
3l: 1,2-ETHANEDIOL (EDOl)
3m: 1,2-ETHANEDIOL (EDOm)
3n: 1,2-ETHANEDIOL (EDOn)
3o: 1,2-ETHANEDIOL (EDOo)
4a: GLYCEROL (GOLa)
4b: GLYCEROL (GOLb)
4c: GLYCEROL (GOLc)
4d: GLYCEROL (GOLd)
5a: MAGNESIUM ION (MGa)
5b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
6FQ
1
Ligand/Ion
2,4-DIOXO-10-[3-(1H-TETRAZOL-5-YL)PHENYL]-2,3,4,10-TETRAHYDROPYRIMIDO[4,5-B]QUINOLINE-8-CARBONITRILE
2
ACT
5
Ligand/Ion
ACETATE ION
3
EDO
4
Ligand/Ion
1,2-ETHANEDIOL
4
GOL
2
Ligand/Ion
GLYCEROL
5
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AD8 (SOFTWARE)
05: AD9 (SOFTWARE)
06: AE1 (SOFTWARE)
07: AE2 (SOFTWARE)
08: AE3 (SOFTWARE)
09: AE4 (SOFTWARE)
10: AE5 (SOFTWARE)
11: AE6 (SOFTWARE)
12: AE7 (SOFTWARE)
13: AE8 (SOFTWARE)
14: AE9 (SOFTWARE)
15: AF1 (SOFTWARE)
16: AF2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
THR A:240 , ARG A:241 , ARG A:276 , ILE A:317 , CYS A:321 , LEU A:323 , HOH A:534 , HOH A:625 , HOH A:648 , ILE B:317 , PRO B:318 , 6FQ B:401
binding site for residue 6FQ A 401
02
AC2
SOFTWARE
ASP A:132 , GLU A:162 , HOH A:501 , HOH A:502 , HOH A:510 , HOH A:535 , HOH A:715 , ARG B:316
binding site for residue MG A 402
03
AC3
SOFTWARE
TRP A:307 , ASP A:358 , HIS A:359 , EDO A:409 , HOH A:502 , HOH A:535 , HOH A:563 , HOH A:679 , PRO B:318 , HOH B:572
binding site for residue GOL A 403
04
AD8
SOFTWARE
ILE A:317 , PRO A:318 , ALA A:319 , 6FQ A:401 , THR B:240 , ARG B:241 , ARG B:276 , ARG B:278 , ILE B:317 , CYS B:321 , LEU B:323 , HOH B:610 , HOH B:624
binding site for residue 6FQ B 401
05
AD9
SOFTWARE
ASP B:132 , GLU B:162 , HOH B:508 , HOH B:531 , HOH B:669
binding site for residue MG B 402
06
AE1
SOFTWARE
ASN B:211 , ARG B:249 , GOL B:404 , HOH B:517 , HOH B:539
binding site for residue GOL B 403
07
AE2
SOFTWARE
PHE B:209 , PRO B:210 , ASN B:211 , GLU B:246 , ARG B:249 , THR B:253 , GOL B:403 , HOH B:540
binding site for residue GOL B 404
08
AE3
SOFTWARE
LYS B:301 , HIS B:302 , GLN B:304 , TYR B:305 , ASP B:308 , LEU B:344 , TRP B:360 , HOH B:695
binding site for residue EDO B 405
09
AE4
SOFTWARE
CYS B:149 , TYR B:153 , GLY B:346 , LEU B:347 , HOH B:576
binding site for residue EDO B 406
10
AE5
SOFTWARE
LYS B:257 , GLU B:260 , HOH B:646
binding site for residue EDO B 407
11
AE6
SOFTWARE
ASP B:277 , TRP B:294 , GLN B:304 , TYR B:305 , ARG B:324 , HOH B:536 , HOH B:567
binding site for residue EDO B 408
12
AE7
SOFTWARE
GLY B:197 , VAL B:199 , HOH B:522 , HOH B:574
binding site for residue ACT B 409
13
AE8
SOFTWARE
ILE B:180 , ILE B:181 , THR B:182 , GLU B:185 , HOH B:501 , HOH B:598
binding site for residue ACT B 410
14
AE9
SOFTWARE
GLY B:197 , HOH B:603 , HOH B:687
binding site for residue ACT B 411
15
AF1
SOFTWARE
TRP B:307 , ASP B:358 , HIS B:359 , HOH B:504
binding site for residue ACT B 412
16
AF2
SOFTWARE
TYR B:170
binding site for residue ACT B 413
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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Chain B
Asymmetric Unit 1
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Asym.Unit (188 KB)
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Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
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