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5J2G
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (74 KB)
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(1)
Title
:
TERNARY COMPLEX CRYSTAL STRUCTURE OF DNA POLYMERASE BETA WITH G:G MISMATCH AT THE PRIMER TERMINUS
Authors
:
V. K. Batra, S. H. Wilson
Date
:
29 Mar 16 (Deposition) - 26 Oct 16 (Release) - 09 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,D,P,T
Biol. Unit 1: A,D,P,T (1x)
Keywords
:
Dna Polymerase Beta, Mismatch Extension, Ternary Complex, Transferase-Dna Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
V. K. Batra, W. A. Beard, L. C. Pedersen, S. H. Wilson
Structures Of Dna Polymerase Mispaired Dna Termini Transitioning To Pre-Catalytic Complexes Support An Induced-Fit Fidelity Mechanism.
Structure V. 24 1863 2016
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Hetero Components
(4, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
2a: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMID... (DUPa)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
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No.
Name
Count
Type
Full Name
1
CL
5
Ligand/Ion
CHLORIDE ION
2
DUP
1
Ligand/Ion
2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
4
NA
2
Ligand/Ion
SODIUM ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:179 , SER A:180 , ARG A:183 , GLY A:189 , ASP A:190 , ASP A:192 , TYR A:271 , PHE A:272 , THR A:273 , GLY A:274 , ASP A:276 , ASN A:279 , MG A:402 , MG A:403 , HOH A:537 , HOH A:548 , HOH A:584 , HOH A:588 , HOH A:644 , HOH A:653 , HOH A:660 , HOH A:688 , DG P:10 , DA T:6
binding site for residue DUP A 401
02
AC2
SOFTWARE
ASP A:190 , ASP A:192 , DUP A:401 , MG A:403 , HOH A:588
binding site for residue MG A 402
03
AC3
SOFTWARE
ASP A:190 , ASP A:192 , ASP A:256 , DUP A:401 , MG A:402 , HOH A:548 , HOH A:644
binding site for residue MG A 403
04
AC4
SOFTWARE
THR A:101 , VAL A:103 , ILE A:106 , DG P:9 , HOH P:106 , HOH P:120
binding site for residue NA A 404
05
AC5
SOFTWARE
LYS A:60 , LEU A:62 , VAL A:65 , HOH A:562 , DC D:3
binding site for residue NA A 405
06
AC6
SOFTWARE
GLN A:264 , TYR A:266 , CYS A:267 , HOH A:520
binding site for residue CL A 406
07
AC7
SOFTWARE
ASN A:37 , ARG A:40 , LYS A:280 , DA T:6 , HOH T:113
binding site for residue CL A 407
08
AC8
SOFTWARE
ASN A:294 , THR A:297 , ARG A:299 , HOH A:704
binding site for residue CL A 408
09
AC9
SOFTWARE
LYS A:81 , LEU A:82 , LEU A:85 , ARG A:89
binding site for residue CL A 409
10
AD1
SOFTWARE
ALA A:32 , HIS A:34 , LYS A:35
binding site for residue CL A 410
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
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Exons
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SCOP Domains
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CATH Domains
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Pfam Domains
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Asymmetric Unit 1
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Asym.Unit (79 KB)
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