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5IYC
Asym. Unit
Info
Asym.Unit (833 KB)
Biol.Unit 1 (825 KB)
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(1)
Title
:
HUMAN CORE-PIC IN THE INITIAL TRANSCRIBING STATE
Authors
:
Y. He, C. Yan, J. Fang, C. Inouye, R. Tjian, I. Ivanov, E. Nogales
Date
:
24 Mar 16 (Deposition) - 18 May 16 (Release) - 22 Jun 16 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
3.90
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X,Y
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,X,Y (1x)
Keywords
:
Initiation, Rna Polymerase Ii, Human, Transcription, Transferase-Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. He, C. Yan, J. Fang, C. Inouye, R. Tjian, I. Ivanov, E. Nogales
Near-Atomic Resolution Visualization Of Human Transcription Promoter Opening.
Nature V. 533 359 2016
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Hetero Components
(2, 13)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
2g: ZINC ION (ZNg)
2h: ZINC ION (ZNh)
2i: ZINC ION (ZNi)
2j: ZINC ION (ZNj)
2k: ZINC ION (ZNk)
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No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
ZN
11
Ligand/Ion
ZINC ION
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:493 , ASP A:495 , ASP A:499
binding site for residue MG A 2001
02
AC2
SOFTWARE
ALA A:494 , ASP A:495 , GLU B:791 , ASP U:282
binding site for residue MG A 2002
03
AC3
SOFTWARE
CYS A:71 , CYS A:74 , CYS A:81 , HIS A:84
binding site for residue ZN A 2003
04
AC4
SOFTWARE
CYS A:111 , CYS A:114 , CYS A:154 , CYS A:184
binding site for residue ZN A 2004
05
AC5
SOFTWARE
CYS B:1119 , CYS B:1122 , CYS B:1137 , CYS B:1140
binding site for residue ZN B 1201
06
AC6
SOFTWARE
CYS C:88 , CYS C:90 , CYS C:94 , CYS C:97
binding site for residue ZN C 301
07
AC7
SOFTWARE
CYS I:17 , CYS I:20 , CYS I:39 , ASN I:41 , CYS I:42
binding site for residue ZN I 201
08
AC8
SOFTWARE
CYS I:86 , CYS I:89 , CYS I:114 , CYS I:119
binding site for residue ZN I 202
09
AC9
SOFTWARE
CYS J:7 , CYS J:10 , CYS J:44 , CYS J:45
binding site for residue ZN J 101
10
AD1
SOFTWARE
CYS L:19 , CYS L:22 , CYS L:36 , CYS L:39
binding site for residue ZN L 101
11
AD2
SOFTWARE
CYS M:15 , HIS M:18 , CYS M:34 , GLU M:36 , CYS M:37 , LEU M:39
binding site for residue ZN M 401
12
AD3
SOFTWARE
CYS Q:129 , CYS Q:132 , CYS Q:154 , CYS Q:157
binding site for residue ZN Q 501
13
AD4
SOFTWARE
CYS U:263 , CYS U:266 , CYS U:291 , CYS U:294
binding site for residue ZN U 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
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CATH Domains
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Pfam Domains
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Atom Selection
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Chain D
Chain E
Chain F
Chain G
Chain H
Chain I
Chain J
Chain K
Chain L
Chain M
Chain N
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Chain R
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Chain T
Chain U
Chain X
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select residue range 5 to 10 in chain 'A'
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Asym.Unit (833 KB)
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