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5IXS
Asym. Unit
Info
Asym.Unit (234 KB)
Biol.Unit 1 (226 KB)
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(1)
Title
:
LACTATE DEHYDROGENASE IN COMPLEX WITH HYDROXYLACTAM INHIBITOR COMPOUND 9: (6R)-3-[(2-CHLOROPHENYL)SULFANYL]-4-HYDROXY-6-(3-HYDROXYPHENYL)-6-(THIOPHEN-3-YL)-5,6-DIHYDROPYRIDIN-2(1H)-ONE
Authors
:
M. Ultsch, C. Eigenbrot
Date
:
23 Mar 16 (Deposition) - 14 Sep 16 (Release) - 09 Nov 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Oxidoreductase Tetramer, Oxireductase-Oxireductase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. E. Purkey, K. Robarge, J. Chen, Z. Chen, L. B. Corson, C. Z. Ding, A. G. Dipasquale, P. S. Dragovich, C. Eigenbrot, M. Evangelista, B. P. Fauber, Z. Gao, H. Ge, A. Hitz, Q. Ho, S. S. Labadie, K. W. Lai, W. Liu Y. Liu, C. Li, S. Ma, S. Malek, T. O'Brien, J. Pang, D. Peterson, L. Salphati, S. Sideris, M. Ultsch, B. Wei, I. Yen, Q. Yue, H. Zhang, A. Zhou
Cell Active Hydroxylactam Inhibitors Of Human Lactate Dehydrogenase With Oral Bioavailability In Mice.
Acs Med. Chem. Lett. V. 7 896 2016
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Hetero Components
(5, 15)
Info
All Hetero Components
1a: (6R)-3-[(2-CHLOROPHENYL)SULFANYL]-... (6EYa)
1b: (6R)-3-[(2-CHLOROPHENYL)SULFANYL]-... (6EYb)
1c: (6R)-3-[(2-CHLOROPHENYL)SULFANYL]-... (6EYc)
1d: (6R)-3-[(2-CHLOROPHENYL)SULFANYL]-... (6EYd)
2a: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEa)
2b: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEb)
2c: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ET... (EPEc)
3a: 1,4-DIHYDRONICOTINAMIDE ADENINE DI... (NAIa)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
5a: 1,4,5,6-TETRAHYDRONICOTINAMIDE ADE... (TXDa)
5b: 1,4,5,6-TETRAHYDRONICOTINAMIDE ADE... (TXDb)
5c: 1,4,5,6-TETRAHYDRONICOTINAMIDE ADE... (TXDc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
6EY
4
Ligand/Ion
(6R)-3-[(2-CHLOROPHENYL)SULFANYL]-4-HYDROXY-6-(3-HYDROXYPHENYL)-6-(THIOPHEN-3-YL)-5,6-DIHYDROPYRIDIN-2(1H)-ONE
2
EPE
3
Ligand/Ion
4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3
NAI
1
Ligand/Ion
1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
4
SO4
4
Ligand/Ion
SULFATE ION
5
TXD
3
Ligand/Ion
1,4,5,6-TETRAHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TRP A:147 , GLY A:151 , PRO A:153 , LYS A:154
binding site for residue EPE A 401
02
AC2
SOFTWARE
GLY A:28 , ALA A:29 , VAL A:30 , ASP A:51 , VAL A:52 , ILE A:53 , THR A:94 , ALA A:95 , GLY A:96 , ALA A:97 , ARG A:98 , ILE A:115 , VAL A:135 , ASN A:137 , LEU A:164 , HIS A:192 , THR A:247 , ILE A:251 , 6EY A:403 , HOH A:502 , HOH A:507 , HOH A:513 , HOH A:579 , HOH A:592
binding site for residue TXD A 402
03
AC3
SOFTWARE
ARG A:98 , ASN A:137 , ASP A:165 , ARG A:168 , HIS A:192 , GLY A:193 , ALA A:237 , TYR A:238 , ILE A:241 , THR A:247 , TXD A:402 , HOH A:502 , HOH A:599
binding site for residue 6EY A 403
04
AC4
SOFTWARE
ARG A:170 , HIS A:185 , HOH A:536 , HOH A:538 , HOH A:622 , HIS C:185 , HOH C:522
binding site for residue SO4 A 404
05
AC5
SOFTWARE
TRP B:147 , GLY B:151 , PHE B:152 , PRO B:153 , LYS B:154
binding site for residue EPE B 401
06
AC6
SOFTWARE
GLY B:28 , ALA B:29 , VAL B:30 , ASP B:51 , VAL B:52 , ILE B:53 , LYS B:56 , THR B:94 , ALA B:95 , ALA B:97 , ARG B:98 , ILE B:115 , VAL B:135 , ASN B:137 , HIS B:192 , THR B:247 , ILE B:251 , 6EY B:403 , HOH B:512 , HOH B:516 , HOH B:521 , HOH B:562 , HOH B:589 , GLY D:102
binding site for residue TXD B 402
07
AC7
SOFTWARE
ARG B:98 , ASN B:137 , ASP B:165 , ARG B:168 , HIS B:192 , GLY B:193 , ALA B:237 , TYR B:238 , ILE B:241 , TYR B:246 , THR B:247 , TXD B:402
binding site for residue 6EY B 403
08
AC8
SOFTWARE
ARG B:170 , HIS B:185 , HOH B:553 , HOH B:573 , HOH B:585 , HOH B:590 , HIS D:185 , HOH D:947
binding site for residue SO4 B 404
09
AC9
SOFTWARE
TRP C:147 , GLY C:151 , PRO C:153 , LYS C:154 , HOH C:515
binding site for residue EPE C 401
10
AD1
SOFTWARE
GLY C:28 , ALA C:29 , VAL C:30 , ASP C:51 , VAL C:52 , ILE C:53 , THR C:94 , ALA C:95 , GLY C:96 , ARG C:98 , ILE C:115 , VAL C:135 , SER C:136 , ASN C:137 , HIS C:192 , THR C:247 , ILE C:251 , 6EY C:403 , HOH C:501 , HOH C:507 , HOH C:530 , HOH C:549
binding site for residue NAI C 402
11
AD2
SOFTWARE
ARG C:98 , ASN C:137 , ASP C:165 , ARG C:168 , HIS C:192 , GLY C:193 , ALA C:237 , TYR C:238 , ILE C:241 , TYR C:246 , THR C:247 , NAI C:402 , HOH C:501
binding site for residue 6EY C 403
12
AD3
SOFTWARE
HIS A:185 , HOH A:557 , ARG C:170 , HIS C:185 , HOH C:503 , HOH C:537 , HOH C:553
binding site for residue SO4 C 404
13
AD4
SOFTWARE
GLY D:28 , ALA D:29 , VAL D:30 , ASP D:51 , VAL D:52 , ILE D:53 , THR D:94 , ALA D:95 , GLY D:96 , ALA D:97 , ARG D:98 , ILE D:115 , ILE D:119 , VAL D:135 , SER D:136 , ASN D:137 , LEU D:164 , HIS D:192 , THR D:247 , ILE D:251 , 6EY D:802 , HOH D:903 , HOH D:907 , HOH D:917 , HOH D:957 , HOH D:1019 , HOH D:1024
binding site for residue TXD D 801
14
AD5
SOFTWARE
ARG D:98 , GLN D:99 , ASN D:137 , ASP D:165 , ARG D:168 , HIS D:192 , GLY D:193 , ALA D:237 , TYR D:238 , ILE D:241 , THR D:247 , TXD D:801 , HOH D:907 , HOH D:931
binding site for residue 6EY D 802
15
AD6
SOFTWARE
HIS B:185 , ARG D:170 , HIS D:185 , HOH D:932 , HOH D:964 , HOH D:968 , HOH D:970
binding site for residue SO4 D 803
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Asymmetric Unit 1
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Asym.Unit (234 KB)
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