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5IWI
Biol. Unit 1
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Asym.Unit (294 KB)
Biol.Unit 1 (286 KB)
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(1)
Title
:
1.98A STRUCTURE OF GSK945237 WITH S.AUREUS DNA GYRASE AND SINGLY NICKED DNA
Authors
:
B. D. Bax, T. J. Miles
Date
:
22 Mar 16 (Deposition) - 25 May 16 (Release) - 29 Jun 16 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.98
Chains
:
Asym. Unit : A,B,C,D,E,F,G
Biol. Unit 1: A,B,C,D,E,F,G (1x)
Keywords
:
Type Iia Topoisomerase, Antibacterial, Inhibitor, Isomerase, Fusion Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. J. Miles, A. J. Hennessy, B. Bax, G. Brooks, B. S. Brown, P. Brown, N. Cailleau, D. Chen, S. Dabbs, D. T. Davies, J. M. Esken, I. Giordano, J. L. Hoover, G. E. Jones, S. K. Kusalakumari Sukmar, R. E. Markwell, E. A. Minthorn, S. Rittenhouse, M. N. Gwynn, N. D. Pearson
Novel Tricyclics (E. G. , Gsk945237) As Potent Inhibitors Of Bacterial Type Iia Topoisomerases.
Bioorg. Med. Chem. Lett. V. 26 2464 2016
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Hetero Components
(2, 11)
Info
All Hetero Components
1a: (1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOX... (6EJa)
2a: CHLORIDE ION (CLa)
3a: GLYCEROL (GOLa)
3b: GLYCEROL (GOLb)
3c: GLYCEROL (GOLc)
3d: GLYCEROL (GOLd)
3e: GLYCEROL (GOLe)
3f: GLYCEROL (GOLf)
3g: GLYCEROL (GOLg)
3h: GLYCEROL (GOLh)
3i: GLYCEROL (GOLi)
3j: GLYCEROL (GOLj)
4a: MANGANESE (II) ION (MNa)
4b: MANGANESE (II) ION (MNb)
4c: MANGANESE (II) ION (MNc)
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Label:
No.
Name
Count
Type
Full Name
1
6EJ
1
Ligand/Ion
(1R)-1-[(4-{[(6,7-DIHYDRO[1,4]DIOXINO[2,3-C]PYRIDAZIN-3-YL)METHYL]AMINO}PIPERIDIN-1-YL)METHYL]-9-FLUORO-1,2-DIHYDRO-4H-PYRROLO[3,2,1-IJ]QUINOLIN-4-ONE
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
GOL
10
Ligand/Ion
GLYCEROL
4
MN
-1
Ligand/Ion
MANGANESE (II) ION
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Sites
(15, 15)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: AD1 (SOFTWARE)
11: AD2 (SOFTWARE)
12: AD3 (SOFTWARE)
13: AD4 (SOFTWARE)
14: AD5 (SOFTWARE)
15: AD6 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:435 , ASP B:508 , ASP B:510 , LYS B:581 , HOH B:802 , HOH B:809 , HOH B:821 , DG E:8 , DG E:9 , DT F:1008
binding site for residue MN B 701
02
AC2
SOFTWARE
PHE A:97 , SER A:112 , GLY A:115 , GLN A:267 , HOH A:715 , HOH A:812 , DC E:4 , DG F:1004
binding site for residue GOL A 501
03
AC3
SOFTWARE
ARG A:47 , ARG A:48 , PRO A:157 , HOH A:627 , HOH A:651 , HOH A:671 , HOH A:798
binding site for residue GOL A 502
04
AC4
SOFTWARE
ASP A:96 , PRO A:219 , ARG A:485 , HOH A:660
binding site for residue GOL A 503
05
AC5
SOFTWARE
GLU A:250 , THR A:262 , ARG A:303 , HOH A:628 , HOH A:635
binding site for residue GOL A 504
06
AC6
SOFTWARE
ASN A:54 , GLU A:55 , ASN A:140
binding site for residue GOL A 505
07
AC7
SOFTWARE
ASN A:313 , HOH A:728 , GLN C:257 , ASP C:311 , ALA C:312 , GOL C:503 , HOH C:746
binding site for residue GOL A 506
08
AC8
SOFTWARE
SER A:315 , HOH A:729 , SER C:315
binding site for residue CL A 507
09
AC9
SOFTWARE
GLU D:435 , ASP D:508 , ASP D:510 , LYS D:581 , HOH D:1101 , HOH D:1126 , HOH D:1148 , DG E:8 , DG E:9 , DT F:1008
binding site for residue MN D 1001
10
AD1
SOFTWARE
HIS C:390 , HOH C:706 , HOH C:901 , DT F:1001 , HOH F:1106
binding site for residue MN C 501
11
AD2
SOFTWARE
PRO C:44 , ARG C:47 , GLU C:156 , HOH C:606 , HOH C:648 , HOH C:654
binding site for residue GOL C 502
12
AD3
SOFTWARE
ARG A:244 , ASN A:319 , GOL A:506 , GLU C:251 , GLY C:255 , ARG C:256 , GLN C:257 , HOH C:602 , HOH C:603 , HOH C:728
binding site for residue GOL C 503
13
AD4
SOFTWARE
ASP B:470 , ARG C:385 , HOH C:617
binding site for residue GOL C 504
14
AD5
SOFTWARE
MET C:113 , GLN C:267 , HOH C:605 , HOH C:750 , HOH C:801 , DG F:1004
binding site for residue GOL C 505
15
AD6
SOFTWARE
ALA A:68 , MET A:75 , ASP A:83 , MET A:121 , ALA C:68 , MET C:75 , ASP C:83 , MET C:121 , DT E:10 , DA E:11 , HOH E:202 , HOH E:203 , HOH E:222 , HOH E:237 , DT G:2010 , DA G:2011
binding site for residue 6EJ E 101
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Asymmetric Unit 1
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Asym.Unit (294 KB)
Header - Asym.Unit
Biol.Unit 1 (286 KB)
Header - Biol.Unit 1
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